View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040-Insertion-3 (Length: 1113)

Name: NF5040-Insertion-3
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040-Insertion-3
NF5040-Insertion-3
[»] chr4 (14 HSPs)
chr4 (425-985)||(42692734-42693265)
chr4 (18-354)||(42693336-42693672)
chr4 (8-229)||(41076180-41076402)
chr4 (812-985)||(42714184-42714352)
chr4 (984-1057)||(21661744-21661817)
chr4 (984-1057)||(21670508-21670581)
chr4 (993-1057)||(12071564-12071629)
chr4 (993-1057)||(40122694-40122759)
chr4 (993-1057)||(14261047-14261112)
chr4 (993-1057)||(21310428-21310493)
chr4 (993-1057)||(25704654-25704719)
chr4 (993-1047)||(34324803-34324857)
chr4 (1001-1057)||(22321476-22321533)
chr4 (1001-1057)||(24706456-24706513)
[»] chr1 (13 HSPs)
chr1 (997-1057)||(23526247-23526308)
chr1 (993-1057)||(284336-284401)
chr1 (993-1057)||(321629-321694)
chr1 (993-1038)||(3943063-3943108)
chr1 (993-1038)||(9588673-9588718)
chr1 (993-1057)||(23045488-23045553)
chr1 (993-1057)||(27211173-27211238)
chr1 (993-1057)||(40783866-40783931)
chr1 (995-1038)||(44228233-44228276)
chr1 (1001-1038)||(13984996-13985033)
chr1 (993-1057)||(24772114-24772179)
chr1 (993-1034)||(41959081-41959122)
chr1 (1001-1038)||(46771648-46771685)
[»] chr7 (8 HSPs)
chr7 (993-1038)||(2911553-2911598)
chr7 (993-1050)||(47110454-47110511)
chr7 (993-1057)||(10981511-10981576)
chr7 (993-1038)||(25060138-25060183)
chr7 (993-1057)||(27813814-27813879)
chr7 (993-1057)||(36453333-36453398)
chr7 (1001-1057)||(25614560-25614617)
chr7 (1001-1057)||(40348971-40349028)
[»] chr3 (13 HSPs)
chr3 (993-1057)||(29375141-29375206)
chr3 (993-1038)||(12094585-12094630)
chr3 (993-1057)||(13364846-13364911)
chr3 (993-1038)||(19911512-19911557)
chr3 (993-1057)||(27707373-27707438)
chr3 (993-1057)||(36881285-36881350)
chr3 (993-1057)||(46694319-46694384)
chr3 (993-1034)||(198858-198899)
chr3 (1001-1057)||(3383087-3383144)
chr3 (993-1057)||(19241877-19241942)
chr3 (1001-1057)||(32835165-32835222)
chr3 (1001-1057)||(43750148-43750205)
chr3 (993-1038)||(44277460-44277505)
[»] chr2 (7 HSPs)
chr2 (993-1057)||(1102506-1102571)
chr2 (993-1057)||(3518911-3518976)
chr2 (993-1057)||(12969948-12970013)
chr2 (993-1057)||(23366792-23366857)
chr2 (993-1038)||(34224383-34224428)
chr2 (993-1057)||(37673946-37674011)
chr2 (993-1057)||(39938173-39938238)
[»] chr8 (14 HSPs)
chr8 (993-1047)||(27035000-27035054)
chr8 (993-1057)||(3585454-3585519)
chr8 (993-1038)||(8697903-8697948)
chr8 (993-1057)||(11174432-11174497)
chr8 (993-1057)||(40918938-40919003)
chr8 (993-1038)||(41307966-41308011)
chr8 (993-1057)||(43275606-43275671)
chr8 (993-1038)||(45278706-45278751)
chr8 (986-1057)||(2540140-2540211)
chr8 (995-1038)||(10646597-10646640)
chr8 (1001-1057)||(7146924-7146981)
chr8 (1001-1057)||(11646534-11646591)
chr8 (993-1057)||(40058512-40058577)
chr8 (993-1038)||(40486458-40486503)
[»] scaffold0257 (1 HSPs)
scaffold0257 (993-1038)||(23470-23515)
[»] chr6 (9 HSPs)
chr6 (993-1057)||(1605582-1605647)
chr6 (993-1057)||(7761304-7761369)
chr6 (993-1057)||(29260195-29260260)
chr6 (993-1047)||(8235627-8235681)
chr6 (993-1038)||(4129438-4129483)
chr6 (993-1057)||(8626485-8626550)
chr6 (993-1057)||(15064903-15064968)
chr6 (993-1038)||(19996720-19996765)
chr6 (1001-1057)||(30734692-30734749)
[»] chr5 (8 HSPs)
chr5 (993-1057)||(12807062-12807127)
chr5 (993-1038)||(15305217-15305262)
chr5 (993-1057)||(25773652-25773717)
chr5 (993-1057)||(30720701-30720766)
chr5 (1001-1047)||(16983269-16983315)
chr5 (1001-1057)||(7277631-7277688)
chr5 (1001-1057)||(36561308-36561365)
chr5 (993-1057)||(37900833-37900898)
[»] scaffold1431 (1 HSPs)
scaffold1431 (996-1057)||(108-170)
[»] scaffold1770 (1 HSPs)
scaffold1770 (993-1038)||(173-218)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1005-1057)||(472-525)
[»] scaffold0054 (1 HSPs)
scaffold0054 (993-1034)||(45457-45498)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 425 - 985
Target Start/End: Complemental strand, 42693265 - 42692734
Alignment:
Q  425 attgaagtcttccgatagaaagtctcaaatctatcaaaatattattgtagatattttactttcatgaaaatcttatgagcgcattgtattccttttttgt 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            ||     
T  42693265 attgaagtcttccgatagaaagtctcaaatctatcaaaatattattgtagatgttttactttcatgaaaatcttatgagcgcatt------------tgc 42693178  T
Q  525 ctcttgttcgcaagaatcgcaactcattgtcattgaatgttagaaccnnnnnnnnnnnnnnnnnngtcgggcccttcaattgtaattcattcattctgcc 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||| ||||||||||||||||||||||    
T  42693177 ctcttgttcgcaagaatcgcaactcattgtcattgaatgttagaaccttttttt-----------gtcgggcccttctattgtaattcattcattctgcc 42693089  T
Q  625 cctcagaaaaattggtaacaccaagacatttatgatccatcgattgatatcaagtgtttaaaccgtgtttatttgaagtgtacaaaagttactactatgc 724  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42693088 cctcagaaaaattggtaacaccaagacatttatgattcatcgattgatatcaagtgtttaaaccgtgtttatttgaagtgtacaaaagttactactatg- 42692990  T
Q  725 cttaaggtttattgtaagagagaagtataggcacaaagaaataagacactaatggcaatatgacctatagtgtgtatttgaattttgatgacttactttg 824  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692989 cttaaagtttattgtaagagagaagtataggcacagagaaataagacactaatggcaatatgacctatagtgtgtatttgaattttgatgacttactttg 42692890  T
Q  825 ttgactactaatgtgtttaatttaagcttgttgacgcacatagttttaagtcaaagtattgcatttaaccacacacaaaaagttgtgtgtattctagaaa 924  Q
    ||| | |||||||||     |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692889 ttggcgactaatgtg-----tttaagcttgttgacgcatatagttttaagtaaaagtattgcatttaaccacacacaaaaagttgtgtgtattctagaaa 42692795  T
Q  925 ccaatccctttaccccatggaaagtgtaaagcttaagaaatttacttcatttaatttgcaa 985  Q
    ||||  ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  42692794 ccaaagcctttaccccatgaaaattgtaaagcttaagaaatttactccatttaatttgcaa 42692734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 42693672 - 42693336
Alignment:
Q  18 atatcaatctatacgatgaatgatgtgtaaggaagacatgagattgtttgaaagcacttagagcatcagacttttgcttcaaaaaatagatccatgtaaa 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693672 atatcaatctatacaatgaatgatgtgtaaggaagacatgagattgtttgaaagcacttagagcatcagacttttgcttcaaaaaatagatccatgtaaa 42693573  T
Q  118 gtgtcaacaaaaataatgtgatagttgtagctgcaagaggaagtgaagggtaagagaacccaaagataacagtgaatggctacaaagggctgattataag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42693572 gtgtcaacaaaaataatgtgatagttgtagctgcaagaggaagtgaagggtaagagaacccaaagataacagtgaatggcttcaaagggctgattataag 42693473  T
Q  218 agtaagcgaggaaggggcatgtaatctatgcgattttccgatgaaacaaaaggagcataaatgtatttttgctcttacccctcagcttcaagatcgatcc 317  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693472 actaagcgaggaaggggcatgtaatctatgcgattttccgatgaaacaaaaggagcataaatgtatttttgctcttacccctcagcttcaagatcgatcc 42693373  T
Q  318 ccattgcagcttggnnnnnnnggtacatatgcttggg 354  Q
    ||||||||||||||       ||||||||||||||||    
T  42693372 ccattgcagcttggtttttttggtacatatgcttggg 42693336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 41076180 - 41076402
Alignment:
Q  8 gttatcgcccatatcaatctatacgatgaatgatgtgtaaggaagacatgagattgtttgaaagcacttagagcatcagacttttgcttcaaaaaataga 107  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||      
T  41076180 gttatcgcccatatcaatttatacgatgaatgatacgtaaggaagacatgagattgtttgaaagcacttagaacatcagactgttgcttaaaaaaata-- 41076277  T
Q  108 tccatgtaaa-gtgtcaacaaaaataatgtgatagttgtagctgcaagaggaagtgaagggtaagagaacccaaaga-------taacagtgaatggcta 199  Q
         ||||| ||||| || ||| |||||| ||||||||||||   |||| ||||||| ||| |||||| |||||||       | ||| |||||||||     
T  41076278 -----gtaaaggtgtctacgaaagtaatgtaatagttgtagctatgagagaaagtgaaaggtgagagaatccaaagatcacaattcacaatgaatggctt 41076372  T
Q  200 caaagggctgattataagagtaagcgagga 229  Q
    ||||||| ||||||||||| |||| |||||    
T  41076373 caaagggttgattataagactaagtgagga 41076402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 812 - 985
Target Start/End: Complemental strand, 42714352 - 42714184
Alignment:
Q  812 atgacttactttgttgactactaatgtgtttaatttaagcttgttgacgcacatagttttaagtcaaagtattgcatttaaccacacacaaaaagttgtg 911  Q
    ||||||||||| ||||||||||| |||     ||||||| |||||||| | |||||| |  ||| ||||||||||||||| |||||||||||||||  ||    
T  42714352 atgacttacttagttgactactagtgt-----atttaaggttgttgacactcatagtctctagtaaaagtattgcatttatccacacacaaaaagtattg 42714258  T
Q  912 tgtattctagaaaccaatccctttaccccatggaaagtgtaaagcttaagaaatttacttcatttaatttgcaa 985  Q
    ||||| ||||||||| |  ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  42714257 tgtatactagaaacctaagcctttaccccatgaaaagtgtaaagcttaagaaatttactccattaaatttgcaa 42714184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 984 - 1057
Target Start/End: Complemental strand, 21661817 - 21661744
Alignment:
Q  984 aataatacttccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||| |||||| ||||||||||||||| || ||||||||||||||||||| ||| ||| |||||||||||    
T  21661817 aataatact-ccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattt 21661744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 984 - 1057
Target Start/End: Complemental strand, 21670581 - 21670508
Alignment:
Q  984 aataatacttccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||| |||||| ||||||||||||||| || ||||||||||||||||||| ||| ||| |||||||||||    
T  21670581 aataatact-ccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattt 21670508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 12071564 - 12071629
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaac-aaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||| ||||||||||    
T  12071564 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattt 12071629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 40122759 - 40122694
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||| ||| ||| |||||||||||    
T  40122759 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattt 40122694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 14261047 - 14261112
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  14261047 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 14261112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 21310428 - 21310493
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  21310428 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 21310493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 25704654 - 25704719
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  25704654 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 25704719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 993 - 1047
Target Start/End: Complemental strand, 34324857 - 34324803
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaac 1047  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||||    
T  34324857 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaac 34324803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 22321533 - 22321476
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  22321533 tttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 22321476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 24706513 - 24706456
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  24706513 tttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 24706456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 997 - 1057
Target Start/End: Original strand, 23526247 - 23526308
Alignment:
Q  997 tccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||||||||    
T  23526247 tccatttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattt 23526308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 284336 - 284401
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  284336 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 284401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 321629 - 321694
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  321629 tccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattt 321694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Original strand, 3943063 - 3943108
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  3943063 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 3943108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Original strand, 9588673 - 9588718
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  9588673 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 9588718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 23045553 - 23045488
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  23045553 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 23045488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 27211238 - 27211173
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  27211238 tccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattt 27211173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 40783931 - 40783866
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  40783931 tccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattt 40783866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 995 - 1038
Target Start/End: Complemental strand, 44228276 - 44228233
Alignment:
Q  995 cctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||||||||||||||||| || |||||||||||||| ||||    
T  44228276 cctccatttcaaaatacatgtccattttggagaaattgctgtaa 44228233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1038
Target Start/End: Complemental strand, 13985033 - 13984996
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||||||||||| || |||||||||||||||||||    
T  13985033 tttcaaaatacatgtccattttggagaaattgcagtaa 13984996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 24772179 - 24772114
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || |||| |||||||||| ||| ||| ||| |||||||||||    
T  24772179 tccctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattt 24772114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1034
Target Start/End: Original strand, 41959081 - 41959122
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgca 1034  Q
    ||||||| ||||||||||||||| || |||||||||||||||    
T  41959081 tccctccgtttcaaaatacatgtccattttggagaaattgca 41959122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1038
Target Start/End: Original strand, 46771648 - 46771685
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||||||||||| || |||||||||||||||||||    
T  46771648 tttcaaaatacatgtccattttggagaaattgcagtaa 46771685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 2911598 - 2911553
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  2911598 tccctccatttcaaaatacatgtccattttggagaaattgcagtaa 2911553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 993 - 1050
Target Start/End: Original strand, 47110454 - 47110511
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaacaaa 1050  Q
    ||||||||||||||||||||||| || ||||||||||||||| ||| ||| |||||||    
T  47110454 tccctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaa 47110511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 10981511 - 10981576
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  10981511 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 10981576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 25060183 - 25060138
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  25060183 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 25060138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 27813814 - 27813879
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  27813814 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 27813879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 36453398 - 36453333
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  36453398 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 36453333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 25614617 - 25614560
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  25614617 tttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattt 25614560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Original strand, 40348971 - 40349028
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  40348971 tttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattt 40349028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 29375141 - 29375206
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||| ||| ||| |||||||||||    
T  29375141 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattt 29375206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Original strand, 12094585 - 12094630
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  12094585 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 12094630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 13364846 - 13364911
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  13364846 tccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattt 13364911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Original strand, 19911512 - 19911557
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  19911512 tccctccgtttcaaaatacatgttcattttggagaaattgcagtaa 19911557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 27707438 - 27707373
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| |||| |||||||||| || ||||||||||||||||||| ||| ||| |||||||||||    
T  27707438 tccctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattt 27707373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 36881285 - 36881350
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  36881285 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 36881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 46694384 - 46694319
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| |  ||||||||||||||| ||||||| ||| |||||||||||    
T  46694384 tccctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattt 46694319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1034
Target Start/End: Original strand, 198858 - 198899
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgca 1034  Q
    ||||||| ||||||||||||||| || |||||||||||||||    
T  198858 tccctccgtttcaaaatacatgtccattttggagaaattgca 198899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Original strand, 3383087 - 3383144
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    |||||||||| |||| || ||||||||||||||||||| ||| ||| |||||||||||    
T  3383087 tttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattt 3383144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 19241942 - 19241877
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||| ||||||||| ||| ||| ||| |||||||||||    
T  19241942 tccctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattt 19241877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 32835222 - 32835165
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaa-taaacaaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||||| ||| |||  ||||||||||||||    
T  32835222 tttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattt 32835165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Original strand, 43750148 - 43750205
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||| ||||| ||| ||| |||||||||||    
T  43750148 tttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattt 43750205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 44277505 - 44277460
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| |||||||||||||||  | |||||||||||||||||||    
T  44277505 tccctccgtttcaaaatacatgtctattttggagaaattgcagtaa 44277460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 1102506 - 1102571
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||| ||| ||| |||||||||||    
T  1102506 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattt 1102571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 3518911 - 3518976
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  3518911 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 3518976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 12970013 - 12969948
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  12970013 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 12969948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 23366792 - 23366857
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  23366792 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 23366857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 34224428 - 34224383
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  34224428 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 34224383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 37674011 - 37673946
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  37674011 tccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattt 37673946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 39938173 - 39938238
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||  || ||||||||||||||| ||| ||| ||| |||||||||||    
T  39938173 tccctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattt 39938238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 993 - 1047
Target Start/End: Original strand, 27035000 - 27035054
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaac 1047  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||| ||| ||||    
T  27035000 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaac 27035054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 3585454 - 3585519
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  3585454 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 3585519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 8697948 - 8697903
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  8697948 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 8697903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 11174497 - 11174432
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  11174497 tccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattt 11174432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 40919003 - 40918938
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  40919003 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 40918938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 41308011 - 41307966
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  41308011 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 41307966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 43275671 - 43275606
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  43275671 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 43275606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 45278751 - 45278706
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  45278751 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 45278706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 986 - 1057
Target Start/End: Complemental strand, 2540211 - 2540140
Alignment:
Q  986 taatacttccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    |||||||||| ||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  2540211 taatacttcc-tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 2540140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 995 - 1038
Target Start/End: Original strand, 10646597 - 10646640
Alignment:
Q  995 cctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||| ||||||||||||||| || |||||||||||||||||||    
T  10646597 cctccgtttcaaaatacatgtccattttggagaaattgcagtaa 10646640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Original strand, 7146924 - 7146981
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || |||| |||||||||||||| ||| ||| |||||||||||    
T  7146924 tttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattt 7146981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 11646591 - 11646534
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  11646591 tttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 11646534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 40058577 - 40058512
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || || |||||||||||| ||| ||| ||| |||||||||||    
T  40058577 tccctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattt 40058512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 40486503 - 40486458
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||| ||||||||||||||    
T  40486503 tccctccgtttcaaaatacatgtccattttgaagaaattgcagtaa 40486458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Original strand, 23470 - 23515
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  23470 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 23515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 1605582 - 1605647
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  1605582 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 1605647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 7761304 - 7761369
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaac-aaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| |||| ||||||||||    
T  7761304 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattt 7761369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 29260195 - 29260260
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  29260195 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 29260260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 993 - 1047
Target Start/End: Original strand, 8235627 - 8235681
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaac 1047  Q
    |||||| |||| |||||||||||||| |||| |||||||||||||| ||| ||||    
T  8235627 tccctctattttaaaatacatgtacattttgaagaaattgcagtaaccaagaaac 8235681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1038
Target Start/End: Original strand, 4129438 - 4129483
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||| | || |||||||||||||||||||    
T  4129438 tccctccgtttcaaaatacatatccactttggagaaattgcagtaa 4129483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 8626485 - 8626550
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || |||| |||||||||| ||| ||| ||| |||||||||||    
T  8626485 tccctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattt 8626550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 15064968 - 15064903
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||| |||||||||||| || ||| ||| |||||||||||    
T  15064968 tccctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattt 15064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 19996765 - 19996720
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| |||||||||||||||  | |||||||||||||||||||    
T  19996765 tccctccgtttcaaaatacatgtctattttggagaaattgcagtaa 19996720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 30734749 - 30734692
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  30734749 tttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 30734692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 12807127 - 12807062
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  12807127 tccctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattt 12807062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1038
Target Start/End: Complemental strand, 15305262 - 15305217
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  15305262 tccctccgtttcaaaatacatgtccattttggagaaattgcagtaa 15305217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Original strand, 25773652 - 25773717
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  25773652 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattt 25773717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 30720766 - 30720701
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  30720766 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 30720701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1001 - 1047
Target Start/End: Original strand, 16983269 - 16983315
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaac 1047  Q
    ||||||||||||||| || ||||||||||||||||||| ||| ||||    
T  16983269 tttcaaaatacatgtccattttggagaaattgcagtaaccaagaaac 16983315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 7277688 - 7277631
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    |||||||||||||||  | ||||||||||||| ||||| ||||||| |||||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattt 7277631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1001 - 1057
Target Start/End: Complemental strand, 36561365 - 36561308
Alignment:
Q  1001 tttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||||||| || ||| || |||||||||||||||| ||| |||||||||||    
T  36561365 tttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattt 36561308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1057
Target Start/End: Complemental strand, 37900898 - 37900833
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaac-aaataaattt 1057  Q
    ||||||| ||||||||||||  | || ||||||||||||||||||| ||| |||| ||||||||||    
T  37900898 tccctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattt 37900833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1057
Target Start/End: Complemental strand, 170 - 108
Alignment:
Q  996 ctccatttcaaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    |||| ||||||||||||||| || ||||||||||||||| ||| ||| ||| |||||||||||    
T  170 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattt 108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1038
Target Start/End: Original strand, 173 - 218
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgcagtaa 1038  Q
    ||||||| ||||||||||||| | || |||||||||||||||||||    
T  173 tccctccgtttcaaaatacatatccactttggagaaattgcagtaa 218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1005 - 1057
Target Start/End: Complemental strand, 525 - 472
Alignment:
Q  1005 aaaatacatgtacaatttggagaaattgcagtaatcaataaa-caaataaattt 1057  Q
    ||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||    
T  525 aaaatacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattt 472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1034
Target Start/End: Original strand, 45457 - 45498
Alignment:
Q  993 tccctccatttcaaaatacatgtacaatttggagaaattgca 1034  Q
    ||||||| ||||||||||||||| || |||||||||||||||    
T  45457 tccctccgtttcaaaatacatgttcattttggagaaattgca 45498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University