View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040-Insertion-4 (Length: 1086)

Name: NF5040-Insertion-4
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040-Insertion-4
NF5040-Insertion-4
[»] chr7 (7 HSPs)
chr7 (497-1080)||(23629375-23629961)
chr7 (451-1086)||(4780593-4781232)
chr7 (451-1086)||(4813024-4813663)
chr7 (8-442)||(23630107-23630523)
chr7 (30-207)||(4779845-4780022)
chr7 (30-202)||(4812276-4812448)
chr7 (991-1080)||(18774345-18774437)
[»] chr2 (1 HSPs)
chr2 (513-961)||(24319401-24319848)
[»] chr5 (3 HSPs)
chr5 (559-1069)||(18800155-18800652)
chr5 (29-203)||(18801254-18801427)
chr5 (245-415)||(18801042-18801212)
[»] chr4 (2 HSPs)
chr4 (343-424)||(25089556-25089637)
chr4 (161-204)||(25093438-25093481)
[»] chr8 (1 HSPs)
chr8 (949-1080)||(16214992-16215128)
[»] chr6 (1 HSPs)
chr6 (992-1065)||(12423949-12424024)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 497 - 1080
Target Start/End: Complemental strand, 23629961 - 23629375
Alignment:
Q  497 gacaatcatcatcttcttaaaatcaaaacagacaatgaagaaaaacacccagagatggcaacaaaaagaggataaaaatggggaagaaggaaaagctctt 596  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  23629961 gacaagcatcatcttctcaaaatcaaaacagacaatgaagaaaaacacccaaagatgacaacaaaaagaggataaaaatgggaaagaagaaaaagctctt 23629862  T
Q  597 cgcaacaaacaaagcctaaaaggaagaaaagggcagtagaggcaaacaaagagaagattctctttaaatagccccaaaaccatccacttcaatggttcaa 696  Q
    | |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||     
T  23629861 cacaacaaacaaagcctaaaaggaagaaaagggcagcagatgaaaacaaagagaagattctctttaaatagccccaaaaccgtccacttcaacggttcat 23629762  T
Q  697 attgaacaaacaatgaagagccaagatctgacggttggaagcggtcttgggaaaacgtaaagcagtcaaaaatacaaatgcaaataccgtttttccatga 796  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  23629761 attgaacaaacaacgaagagacaagatctgacggttggaagcggtcttgggaaaacgtaaagcagtcaaagctacaaatgcaaatagcgtttttccatga 23629662  T
Q  797 gcgcgtacaacacacgaacaagacacatggaaagaagaaatgaacgtccaacacttcgtcaacgttccatctgaagcatttaatcaccaactactcccac 896  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||  |||||||||||||||||||||||||||||||    
T  23629661 gcgagtacaacacacgaacaagacagatggaaagaagaaatgaacgtccatcacatcgccaacgttctgtctgaagcatttaatcaccaactactcccac 23629562  T
Q  897 taactcatagtgggacacctcctactcacgggcggaaacaaaattcaacaacaaacacttcaagggccacccgacttagctcaacaacaaacac--cact 994  Q
    ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||  ||||    
T  23629561 taactcatagtgggatacctcctacttatgggcggaaacaaaattcaacaacaaacacttgaagggccgcccgacttagctcaacaacggacaccacact 23629462  T
Q  995 ctttgcaggcgggcttcagttcctgacac-acgcatcgagggccgcaggact-agtcgtcgacgcgtgcctttgatcg-acgcctcctt 1080  Q
    ||||||||||  | |||||||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  23629461 ctttgcaggc--gtttcagttcctaacacaacgcatcgagggccgcaggactaagtcgtcgacgcgcgcctttgatcgaacgcctcctt 23629375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 451 - 1086
Target Start/End: Original strand, 4780593 - 4781232
Alignment:
Q  451 gtcaccatgaaaacatattagatctccctctagaacccacaaagtagacaatcatcatcttcttaaaatcaaaacagacaatgaagaaaaacacccagag 550  Q
    |||||||  |||||| || |||||||||||| |||||| ||||| ||||||| || || |||| |||||| ||||||||||  |||||||||| ||| |     
T  4780593 gtcaccagaaaaacacatgagatctccctctggaacccgcaaagaagacaataattattttctcaaaatcgaaacagacaacaaagaaaaacatccaaaa 4780692  T
Q  551 atggcaacaaaaagaggataaaaatggggaagaaggaaaagctcttcgcaacaaacaaagcctaaaaggaagaaaagggcagtagaggcaaacaaagaga 650  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||  |  ||   |||||||||||    
T  4780693 atggcaataaaaagaggataaaaagggggaagaagtaaaagctcttcgcaacaaacaaagcctaaaaggaaaaaaagggttgcggaaaaaaacaaagaga 4780792  T
Q  651 agattctctttaaatagccccaaaaccatccacttcaatggttcaaattgaacaaacaatgaagagccaagatctgacggttggaagcggtcttgggaaa 750  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||  || ||  ||| || ||||||| ||||| ||||||||||||| | || |||||||    
T  4780793 agattctctttaaatagtcccaaaactgtccacttcaacggttcggatggaggaaaaaacgaagagctaagatttgacggttggaagtgatcgtgggaaa 4780892  T
Q  751 acgtaaagcagtcaaa--aatacaaatgcaaataccgtttttccatgagcgcgtacaacacacgaacaagacacatggaaagaagaaatgaacgtccaac 848  Q
    ||| || ||| |||||  |||||| |  ||||||     ||||||||||||||||| ||| ||||||||||||| |||||||||||| |||| |  || |    
T  4780893 acggaacgca-tcaaagcaatacaca--caaataaaaaatttccatgagcgcgtacgacagacgaacaagacacgtggaaagaagaattgaatggacatc 4780989  T
Q  849 acttcgtcaacgttccatctgaagcatttaatcaccaactactcccactaactcatagtgggacacctcctactcacgggcggaaacaaaattcaacaac 948  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  4780990 acattgtcaacgttccatctgaagcatttaatcaccaactactcccactaactcatagtgggatacctcctactcacgggcggaagcaaaattcaacaac 4781089  T
Q  949 aaacacttcaagggccacccgacttagctcaacaacaaacac--cactctttgcaggcgggcttcagttcctgacac-acgcatcgagggccgcaggact 1045  Q
    ||| |||||||||| |  ||||||||| |||||||   || |  |||| |||||| || | ||||| |||||||||| || ||| |||||||||  ||||    
T  4781090 aaatacttcaagggtcgtccgacttagatcaacaatggacgccacactatttgcaagcagacttcaattcctgacacaactcattgagggccgccagact 4781189  T
Q  1046 -agtcgtcgacgcgtgcctttgatcg-acgcctccttctctgc 1086  Q
     ||||||||||| | ||||||||||| ||| ||||||||||||    
T  4781190 aagtcgtcgacgagcgcctttgatcgaacgtctccttctctgc 4781232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 451 - 1086
Target Start/End: Original strand, 4813024 - 4813663
Alignment:
Q  451 gtcaccatgaaaacatattagatctccctctagaacccacaaagtagacaatcatcatcttcttaaaatcaaaacagacaatgaagaaaaacacccagag 550  Q
    |||||||  |||||| || |||||||||||| |||||| ||||| ||||||| || || |||| |||||| ||||||||||  |||||||||| ||| |     
T  4813024 gtcaccagaaaaacacatgagatctccctctggaacccgcaaagaagacaataattattttctcaaaatcgaaacagacaacaaagaaaaacatccaaaa 4813123  T
Q  551 atggcaacaaaaagaggataaaaatggggaagaaggaaaagctcttcgcaacaaacaaagcctaaaaggaagaaaagggcagtagaggcaaacaaagaga 650  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||  |  ||   |||||||||||    
T  4813124 atggcaataaaaagaggataaaaagggggaagaagtaaaagctcttcgcaacaaacaaagcctaaaaggaaaaaaagggttgcggaaaaaaacaaagaga 4813223  T
Q  651 agattctctttaaatagccccaaaaccatccacttcaatggttcaaattgaacaaacaatgaagagccaagatctgacggttggaagcggtcttgggaaa 750  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||  || ||  ||| || ||||||| ||||| ||||||||||||| | || |||||||    
T  4813224 agattctctttaaatagtcccaaaactgtccacttcaacggttcggatggaggaaaaaacgaagagctaagatttgacggttggaagtgatcgtgggaaa 4813323  T
Q  751 acgtaaagcagtcaaa--aatacaaatgcaaataccgtttttccatgagcgcgtacaacacacgaacaagacacatggaaagaagaaatgaacgtccaac 848  Q
    ||| || ||| |||||  |||||| |  ||||||     ||||||||||||||||| ||| ||||||||||||| |||||||||||| |||| |  || |    
T  4813324 acggaacgca-tcaaagcaatacaca--caaataaaaaatttccatgagcgcgtacgacagacgaacaagacacgtggaaagaagaattgaatggacatc 4813420  T
Q  849 acttcgtcaacgttccatctgaagcatttaatcaccaactactcccactaactcatagtgggacacctcctactcacgggcggaaacaaaattcaacaac 948  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  4813421 acattgtcaacgttccatctgaagcatttaatcaccaactactcccactaactcatagtgggatacctcctactcacgggcggaagcaaaattcaacaac 4813520  T
Q  949 aaacacttcaagggccacccgacttagctcaacaacaaacac--cactctttgcaggcgggcttcagttcctgacac-acgcatcgagggccgcaggact 1045  Q
    ||| |||||||||| |  ||||||||| |||||||   || |  |||| |||||| || | ||||| |||||||||| || ||| |||||||||  ||||    
T  4813521 aaatacttcaagggtcgtccgacttagatcaacaatggacgccacactatttgcaagcagacttcaattcctgacacaactcattgagggccgccagact 4813620  T
Q  1046 -agtcgtcgacgcgtgcctttgatcg-acgcctccttctctgc 1086  Q
     ||||||||||| | ||||||||||| ||| ||||||||||||    
T  4813621 aagtcgtcgacgagcgcctttgatcgaacgtctccttctctgc 4813663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 23630523 - 23630107
Alignment:
Q  8 atagtaaccatatataaaatgtgtggcatgagataaaatgtgcgcacaataaaaaacgtggcatgaaataaaatgagtggatgcggaggtaaaggaaaag 107  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  23630523 atagtaaccatatataaaatgcgtggcatgaaataaaatgcgcggacaataaaaaacgtggcatgaaataaaatgagtggatgcagagagaaaggaaaag 23630424  T
Q  108 ctcgggcggcacatcaaaaacaacaaacaaaggtaaaagaaagacattcaggcttcttttctttcaaacattcaaatcaattacaagaggagccgccaca 207  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||| |||||||||     
T  23630423 ctcgggcggcacaacaaaaataacaaacaaaggtaagagaaagacattcaatcttcttttcattcaaacattcaaatcaattacaagagaagccgccac- 23630325  T
Q  208 aacggaactacatcnnnnnnnnnnnnnnnnnnnnntacctatcctaaataatcactaaaagtccgccgaagaaatgaacaacgctcggttgctaacatcg 307  Q
    ||||||||||||||                     | |||||||||||||||||||||||||||||| |||||||||||||||||| |||              
T  23630324 aacggaactacatcataaagaaaaggaaaacaaaatccctatcctaaataatcactaaaagtccgcctaagaaatgaacaacgctcagtt---------- 23630235  T
Q  308 aagccaaaactgggccataacttgatggcgggtttgcacccaggagaagactcaaatcggtgcttcgacgaagatgacgagggaaaagcctagttccatc 407  Q
            |||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  23630234 -------tactgggccataacttgatggcgggcttgcacccaaaagaagactcaaatcggtgcttcgacgaagatggcgagggaaaagcctatttccatc 23630142  T
Q  408 aaattcaaagacacatgaccctcgacgggaacctt 442  Q
    |||||||| |||||| | |||||||||||||||||    
T  23630141 aaattcaaggacacacggccctcgacgggaacctt 23630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 4779845 - 4780022
Alignment:
Q  30 gtggcatgagataaaatgtgcgcacaataaaaaacgtggcatgaaataaaatgagtggatgcggaggtaaaggaaaagctcgggcggcacatcaaaaaca 129  Q
    |||| |||| |||||||| ||| |||||||||    ||||||||||||||||| |  |||   |||| |||||||||||||| |||||||| ||||||||    
T  4779845 gtgggatgaaataaaatgcgcggacaataaaatctctggcatgaaataaaatgcgccgatatagagggaaaggaaaagctcgtgcggcacaacaaaaaca 4779944  T
Q  130 acaaacaaaggtaaaagaaagacattcaggcttcttttctttcaaacattcaaatcaattacaagaggagccgccaca 207  Q
    | ||||||||| || |||||| ||||||  ||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  4779945 aaaaacaaaggaaagagaaaggcattcaaacttcttttcattcaaacattcaaaacaattacaagaggagccgacaca 4780022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 4812276 - 4812448
Alignment:
Q  30 gtggcatgagataaaatgtgcgcacaataaaaaacgtggcatgaaataaaatgagtggatgcggaggtaaaggaaaagctcgggcggcacatcaaaaaca 129  Q
    |||| |||| |||||||| ||| |||||||||    ||||||||||||||||| |  |||   |||| |||||||||||||| |||||||| ||||||||    
T  4812276 gtgggatgaaataaaatgcgcggacaataaaatctctggcatgaaataaaatgcgccgatatagagggaaaggaaaagctcgtgcggcacaacaaaaaca 4812375  T
Q  130 acaaacaaaggtaaaagaaagacattcaggcttcttttctttcaaacattcaaatcaattacaagaggagccg 202  Q
    | ||||||||| || |||||| ||||||  ||||||||| |||||||||||||| ||||||||||||||||||    
T  4812376 aaaaacaaaggaaagagaaaggcattcaaacttcttttcattcaaacattcaaaacaattacaagaggagccg 4812448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 991 - 1080
Target Start/End: Complemental strand, 18774437 - 18774345
Alignment:
Q  991 cactctttgcaggcgggcttcagttcctgacac-acgcatcgagggccgcaggact-agtcgtcgacgcgtgcctttgatcga-cgcctcctt 1080  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||||| | ||||| ||||||||||| |   |||||||||| |||||||||    
T  18774437 cactctttgcgggcgggcttcagttcctgacacaacgcattgagggccaccggactaagtcgtcgacgagcagctttgatcgatcgcctcctt 18774345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 513 - 961
Target Start/End: Complemental strand, 24319848 - 24319401
Alignment:
Q  513 ttaaaatcaaaacagacaatgaagaaaaacacccagagatggcaacaaaaagaggataaaaatggggaagaaggaaaagc--tcttcgcaacaaacaaag 610  Q
    |||||||| ||||| |||||||||||||||||||| || |||||||  ||||| |||||||| ||| |||||  ||||    |||||||||||||||| |    
T  24319848 ttaaaatcgaaaca-acaatgaagaaaaacacccaaaggtggcaacggaaagaagataaaaaggggaaagaataaaaaaaagtcttcgcaacaaacaatg 24319750  T
Q  611 cctaaaaggaagaaaagggcagtagaggcaaacaaagagaagattctctttaaatagccccaaaaccatccacttcaatggttcaaattgaacaaacaat 710  Q
    ||||||| |||||||||| | |  |||  | |||||| |||||| |||||||||||||| ||||||| ||||| ||||||| | | ||||| |||  ||     
T  24319749 cctaaaaagaagaaaagg-ctgcggagaaatacaaagggaagatcctctttaaatagcctcaaaaccgtccacatcaatggatgagattgagcaat-aac 24319652  T
Q  711 gaagagccaagatctgacggttggaagcggtcttgggaaaacgtaaagcagtcaaaaatacaaatgcaaataccgtttttccatgagcgcgtacaacaca 810  Q
    ||||||||| |||||||||||||| || |||||||||||||||||| || ||||||  ||||   ||  ||| | |||||| | || ||||||||| |||    
T  24319651 gaagagccacgatctgacggttggcagtggtcttgggaaaacgtaacgcggtcaaagctacatgcgcgtataacctttttctaggaacgcgtacaataca 24319552  T
Q  811 cgaacaagacacatggaaagaagaaatgaacgtccaacacttcgtcaacgttccatctgaagcatttaatcaccaactactcccactaactcatagtggg 910  Q
    ||||||| |||| |||||  ||||| |||||| |||  || ||  |||| |||| | |||| |||||||   |||||||||||||||||||||| |||||    
T  24319551 cgaacaaaacacgtggaacaaagaactgaacgaccataacatcaccaaccttccctttgaaacatttaagtgccaactactcccactaactcattgtggg 24319452  T
Q  911 acacctcctactcacgggcggaaacaaaattcaacaacaaacacttcaagg 961  Q
     | |||||||||||| | ||||| ||||  ||| |||||||  ||||||||    
T  24319451 gcgcctcctactcacagacggaatcaaagctcaccaacaaatgcttcaagg 24319401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 559 - 1069
Target Start/End: Complemental strand, 18800652 - 18800155
Alignment:
Q  559 aaaaagaggataaaaatggggaagaaggaaaagctcttcgcaacaaacaaa--gcctaaaaggaagaaaagggcagtagaggcaaacaaagagaagattc 656  Q
    ||||||| |||||||  ||| |||||| |||||| |||| ||||||| |||  |||||||||||||||| |||| | | ||  |||||| | ||||||||    
T  18800652 aaaaagaagataaaagggggaaagaag-aaaagcccttctcaacaaaaaaaatgcctaaaaggaagaaa-gggctgcatagaaaaacaaggggaagattc 18800555  T
Q  657 tctttaaatagccccaaaaccatccacttcaatggttcaaattgaacaaacaatgaagagccaagatctgacggttggaagcggtcttgggaaaacgtaa 756  Q
    ||||||||||||||||||||| |  || |||| |  ||| ||||| ||| |||  |||||| | ||||||| |||||| || ||||||||||||| ||||    
T  18800554 tctttaaatagccccaaaaccttttacatcaacgaatcatattgagcaa-caacaaagagcgatgatctgaaggttggcagtggtcttgggaaaaagtaa 18800456  T
Q  757 agcagtcaaaaatacaaatgcaaataccgtttttccatgagcgcgtacaacacacgaacaagacacatggaaagaagaaatgaacgtccaacacttcgtc 856  Q
     || ||||||  ||||   |   ||| ||| ||||   ||||| ||||||||||||||||| |||||||||||||  || | ||   ||| ||| ||| |    
T  18800455 cgcggtcaaagctacacgcgagtataacgtgtttctgggagcgtgtacaacacacgaacaaaacacatggaaagattaacttaattgccatcacatcgcc 18800356  T
Q  857 aacgttccatctgaagcatttaatcaccaactactcccactaactcatagtgggacacctcctactcacgggcggaaacaaaattcaacaacaaacactt 956  Q
    |||||||||||||||||||||||   |||| ||||||||||||||||||||                |||||||||| ||||  | | ||||||||||||    
T  18800355 aacgttccatctgaagcatttaagtgccaattactcccactaactcatagt----------------acgggcggaatcaaagcttaccaacaaacactt 18800272  T
Q  957 caagggccacccgacttagctcaacaacaaacac--cactctttgcaggcgggcttcagttcctgacac-acgcatcgagggccgcaggact-agtcgtc 1052  Q
    ||||||||  ||||||||||||| |||   ||||  |||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||| ||||||     
T  18800271 caagggccgtccgacttagctcatcaatggacaccacactctttgcgggcgggcttcagttcttgacacaacgcatcgagggccgccggactaagtcgtt 18800172  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 18801427 - 18801254
Alignment:
Q  29 tgtggcatgagataaaatgtgcgcacaataaaaaacgtggcatgaaataaaatgagtggatgcggaggtaaaggaaaagctcgggcggcacatcaaaaac 128  Q
    |||||||||| ||||| |||||| |||||  |||||||||||| ||||||||||  ||||| |  ||| |||||||||||| ||| |||||| ||| |||    
T  18801427 tgtggcatgaaataaattgtgcgaacaatccaaaacgtggcataaaataaaatgcatggatacaaagggaaaggaaaagcttgggtggcacaacaacaac 18801328  T
Q  129 aacaaacaaaggtaaaagaaagacattcaggcttcttttctttcaaacattcaaatcaattacaagaggagccgc 203  Q
     || ||| |||| || | |||| |  ||| ||||||| || ||||||||||||||||| ||||||||||||||||    
T  18801327 gac-aacgaaggaaagaaaaaggctctcatgcttcttctcattcaaacattcaaatcacttacaagaggagccgc 18801254  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 245 - 415
Target Start/End: Complemental strand, 18801212 - 18801042
Alignment:
Q  245 cctatcctaaataatcactaaaagtccgccgaagaaatgaacaacgctcggttgctaacatcgaagccaaaactgggccataacttgatggcgggtttgc 344  Q
    |||| |||||| |||||||||  | ||| ||||||||||||||||||||||||||||| ||  ||| |||||   ||||| |||  || | | |  |  |    
T  18801212 cctaacctaaacaatcactaaggggccgtcgaagaaatgaacaacgctcggttgctaatattaaagtcaaaatcaggccacaaccagacgacagactcac 18801113  T
Q  345 acccaggagaagactcaaatcggtgcttcgacgaagatgacgagggaaaagcctagttccatcaaattcaa 415  Q
    |||||||||||||||||||||||||||| |||||   ||  || || ||||||||||||||||||||||||    
T  18801112 acccaggagaagactcaaatcggtgctttgacgagcttggtgaagggaaagcctagttccatcaaattcaa 18801042  T

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Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 343 - 424
Target Start/End: Complemental strand, 25089637 - 25089556
Alignment:
Q  343 gcacccaggagaagactcaaatcggtgcttcgacgaagatgacgagggaaaagcctagttccatcaaattcaaagacacatg 424  Q
    ||||||| ||||||||||||||||||| |||||||| | || ||| || |||||||||||| ||||||||||| ||||||||    
T  25089637 gcacccaagagaagactcaaatcggtgattcgacgaggttggcgaagggaaagcctagttctatcaaattcaaggacacatg 25089556  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 25093481 - 25093438
Alignment:
Q  161 ttcttttctttcaaacattcaaatcaattacaagaggagccgcc 204  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  25093481 ttcttttcattcaaacattcaaatcaattacaagaggggccgcc 25093438  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 949 - 1080
Target Start/End: Complemental strand, 16215128 - 16214992
Alignment:
Q  949 aaacacttcaagggccacccgacttagctcaacaacaaacaccac--tctttgcaggcgggcttcagttcctgacac-acgcatcgagggccgcaggact 1045  Q
    ||||||||||||||||  | ||||||| ||| |||| ||| ||||  ||||||  ||||||||| | |||||||||| || ||||||||||||  |||||    
T  16215128 aaacacttcaagggccgtctgacttagatcatcaacgaacgccacactctttgtgggcgggctttaattcctgacacaacacatcgagggccgttggact 16215029  T
Q  1046 -agtcgtcgacgcgtgcctttgatcg-acgcctcctt 1080  Q
     || |||||||| | ||||||||||| ||||||||||    
T  16215028 aagccgtcgacgagcgcctttgatcgaacgcctcctt 16214992  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 992 - 1065
Target Start/End: Original strand, 12423949 - 12424024
Alignment:
Q  992 actctttgcaggcgggcttcagttcctgacac-acgcatcgagggccgcaggact-agtcgtcgacgcgtgccttt 1065  Q
    ||||||||| |||||| || |||||||||||| |||||||||||||||| | ||| ||||||||||  ||||||||    
T  12423949 actctttgcgggcgggtttaagttcctgacacaacgcatcgagggccgccgaactaagtcgtcgacatgtgccttt 12424024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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