View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040-Insertion-5 (Length: 783)

Name: NF5040-Insertion-5
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040-Insertion-5
NF5040-Insertion-5
[»] chr8 (11 HSPs)
chr8 (10-264)||(11993348-11993592)
chr8 (554-751)||(11990679-11990878)
chr8 (441-533)||(11990091-11990183)
chr8 (461-544)||(11997648-11997731)
chr8 (460-544)||(12009487-12009571)
chr8 (456-514)||(12003984-12004042)
chr8 (571-750)||(18928568-18928749)
chr8 (564-753)||(25429953-25430145)
chr8 (347-400)||(11991260-11991313)
chr8 (564-647)||(12006753-12006836)
chr8 (564-622)||(11755705-11755763)
[»] chr4 (8 HSPs)
chr4 (566-712)||(10037865-10038013)
chr4 (579-749)||(35823602-35823774)
chr4 (564-633)||(45774063-45774132)
chr4 (658-749)||(24913787-24913878)
chr4 (658-749)||(24917472-24917563)
chr4 (571-622)||(24917590-24917641)
chr4 (564-726)||(44987224-44987389)
chr4 (564-633)||(2295428-2295497)
[»] chr5 (4 HSPs)
chr5 (564-727)||(26564912-26565078)
chr5 (564-633)||(29231077-29231146)
chr5 (563-681)||(2627961-2628081)
chr5 (564-684)||(32076536-32076658)
[»] chr6 (7 HSPs)
chr6 (571-748)||(12312030-12312210)
chr6 (564-681)||(688079-688198)
chr6 (10-106)||(33704418-33704521)
chr6 (564-681)||(10229449-10229568)
chr6 (564-633)||(2032355-2032425)
chr6 (564-646)||(8485982-8486064)
chr6 (564-618)||(10567348-10567402)
[»] chr2 (10 HSPs)
chr2 (571-749)||(36467143-36467323)
chr2 (564-681)||(7017839-7017958)
chr2 (9-103)||(34190177-34190270)
chr2 (571-750)||(35298369-35298552)
chr2 (564-681)||(42794773-42794892)
chr2 (590-750)||(17328641-17328804)
chr2 (564-632)||(40498676-40498744)
chr2 (565-640)||(2788950-2789025)
chr2 (571-614)||(5913032-5913075)
chr2 (564-680)||(37272909-37273027)
[»] chr1 (7 HSPs)
chr1 (571-726)||(38682928-38683086)
chr1 (564-750)||(14286953-14287142)
chr1 (564-681)||(13558486-13558605)
chr1 (564-632)||(31513617-31513685)
chr1 (571-646)||(16122830-16122905)
chr1 (564-633)||(40693985-40694054)
chr1 (564-633)||(50726706-50726775)
[»] chr3 (8 HSPs)
chr3 (573-744)||(40614762-40614935)
chr3 (564-633)||(7629196-7629265)
chr3 (571-681)||(29324085-29324197)
chr3 (564-681)||(45472603-45472722)
chr3 (564-681)||(32835241-32835361)
chr3 (700-750)||(20819133-20819183)
chr3 (564-633)||(38489726-38489795)
chr3 (658-751)||(52695659-52695752)
[»] chr7 (4 HSPs)
chr7 (564-633)||(42040456-42040525)
chr7 (564-633)||(45648223-45648292)
chr7 (564-681)||(47843766-47843885)
chr7 (564-622)||(40836453-40836511)
[»] scaffold0565 (1 HSPs)
scaffold0565 (572-681)||(7907-8018)
[»] scaffold0495 (1 HSPs)
scaffold0495 (564-681)||(6164-6283)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 7e-82; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 11993592 - 11993348
Alignment:
Q  10 tgtgatgtatgtgttttatctattaaaaataaataaataagtgaggaaaagtatatggagctatagtcccacgtagctccaacatggttccgcccctaga 109  Q
    |||||||||||||||||||||||||||||     ||||||| |   ||||| || || |||||||||||||| |||||||||||||| ||||||||||||    
T  11993592 tgtgatgtatgtgttttatctattaaaaa-----aaataaggggaaaaaagcatgtgcagctatagtcccacatagctccaacatggatccgcccctaga 11993498  T
Q  110 tgtgggactatttttaatggcacttttcttgttcagtggtatgtatgcctaactcaatgtcgggggccgttatagcagcctgaattagctaattaataga 209  Q
    ||||||||||||||||||||| ||||||||| |||||||||     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11993497 tgtgggactatttttaatggctcttttcttgctcagtggta-----gcctaactcaatgtcgggggccgttatagcagcctaaattagctaattaataga 11993403  T
Q  210 cggaaaagattaggggtatggtccttctgtgaatgacagaagtttcaattaatgg 264  Q
    |  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11993402 ctaaaaagattagtggtatggtccttctgtgaatgacagaagtttcaattaatgg 11993348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 554 - 751
Target Start/End: Complemental strand, 11990878 - 11990679
Alignment:
Q  554 ttcgtccacaaagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagc 653  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||| |||||||| ||| |    
T  11990878 ttcgtccacagagtataatttttagtggtttatctagaaacaattctactaatgcatatctaaaattgagttatatacatatccactgaattttcgcaac 11990779  T
Q  654 aatgt--cacttttctacccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatcca 751  Q
    |||||  |||||||||||||||||||||||||| ||||  ||| |||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  11990778 aatgtcacacttttctacccttcatcttttctaggatatgtatattttaagtattttataagtatttttgtgtatccatggagtatcctataactatcca 11990679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 441 - 533
Target Start/End: Complemental strand, 11990183 - 11990091
Alignment:
Q  441 tgtttaatttgtacatattgtgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttattcacttctgcaatcattac 533  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  11990183 tgtttaatttgtacatattgtgtaggttaacaatgcagggattggcggagttgaaattaaagatagtgatttattcacttcagccatcattac 11990091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 461 - 544
Target Start/End: Complemental strand, 11997731 - 11997648
Alignment:
Q  461 tgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttattcacttctgcaatcattactagtggggtta 544  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| || ||||||||||    
T  11997731 tgtaggttaacaatgctgggattagcggggttgaagttaaagaccgtgatttattcacttctgcaatcatgacgagtggggtta 11997648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 460 - 544
Target Start/End: Complemental strand, 12009571 - 12009487
Alignment:
Q  460 gtgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttattcacttctgcaatcattactagtggggtta 544  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||| |||| ||||||||||| | ||||||||    
T  12009571 gtgtaggttaacaatgccgggattagcggagttgaagttaacgacactgatttattctcttcagcaatcattacgaatggggtta 12009487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 514
Target Start/End: Complemental strand, 12004042 - 12003984
Alignment:
Q  456 tattgtgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttat 514  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  12004042 tattttgtaggttaacaatgctgggattaacggaattgaaattaaagacagtgatttat 12003984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 571 - 750
Target Start/End: Original strand, 18928568 - 18928749
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcacttttcta 668  Q
    ||||||||||||| ||| ||||||||||||| | ||| ||||||||| |||| | |||||||| || ||| ||||||| || || ||  ||| |||| ||    
T  18928568 attttaagtggttcatcgagaaacaattctactgatgcatatctaaaattgaatcatatacatctcaattcaatttttacaacattgtctcaatttttta 18928667  T
Q  669 cccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatcc 750  Q
    | | |||| ||||||| ||||| ||| | | || ||| ||||||||||  ||||||||  |||| ||||| |||||||||||    
T  18928668 ctcctcatattttctaggataagtatatgtaaagtatcttataagtatcattgtgtatatgtggagtatcatataagtatcc 18928749  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 753
Target Start/End: Complemental strand, 25430145 - 25429953
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| ||||||||||||| |||  |||||||||||| ||||| ||||||||| |||| | ||||| || |    ||||||||| || || ||  ||||    
T  25430145 aagtataattttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctgtcatgaatttttacaacattgtctcac 25430046  T
Q  662 ttttctacccttcatc-ttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatccatt 753  Q
    |||| ||||||||||| ||||||| |||| |||| |   || ||| ||||||||||  ||||||||| ||||  |||| ||||||||||||||    
T  25430045 ttttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttgtgtatctgtggattatcatataagtatccatt 25429953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 11991313 - 11991260
Alignment:
Q  347 gggtccacagaaaatgaaaacaagataacatgaggttgaggtgtaggataggag 400  Q
    ||||||||| |||||||||||||||||||||||||||||||  || ||||||||    
T  11991313 gggtccacaaaaaatgaaaacaagataacatgaggttgagggataagataggag 11991260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 647
Target Start/End: Complemental strand, 12006836 - 12006753
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttt 647  Q
    |||||| |||||||| |||| ||| | ||||||||||| | ||| ||||||||| |||| | |||||||| |||| ||||||||    
T  12006836 aagtataattttaagcggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaatttt 12006753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 622
Target Start/End: Original strand, 11755705 - 11755763
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttga 622  Q
    |||||| |||||||| |||| ||| ||||||||||||| ||||| ||||||||| ||||    
T  11755705 aagtataattttaagcggttcatcaagaaacaattctactaatgcatatctaaaattga 11755763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 566 - 712
Target Start/End: Original strand, 10037865 - 10038013
Alignment:
Q  566 gtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcactt 663  Q
    |||| ||||||||||||| ||| |||||||| |||| | ||| ||||||||| |||| | |||||||| ||||||||||||| ||| || ||  ||||||    
T  10037865 gtattattttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaacattgtctcactt 10037964  T
Q  664 ttctacccttcatcttttctacgataaatatcttttaaatattttataa 712  Q
    || |||||||||||||||||| |||| |||| | | |||||| ||||||    
T  10037965 ttttacccttcatcttttctaggatacatatatgtgaaatatcttataa 10038013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 579 - 749
Target Start/End: Original strand, 35823602 - 35823774
Alignment:
Q  579 tggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcacttttctacccttcat 676  Q
    ||||||||| ||||||||||||| ||||  ||||||||| |||| ||||||||||||||| |   ||||  || || ||  |||||||  ||||||||||    
T  35823602 tggtttatcgagaaacaattctactaattcatatctaaaattgaattatatacatttccaatattttttcacaacattgtctcactttcttacccttcat 35823701  T
Q  677 cttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatc 749  Q
    |||||||||||||   |||||| || ||| |||||||||| |||| |||||  ||  ||||| ||||||||||    
T  35823702 cttttctacgataggcatctttgaagtatcttataagtatctttgggtatctatgaagtatcttataagtatc 35823774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 45774132 - 45774063
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| ||||||||||||| ||| ||||||||||||||| ||| ||||||||| |||| | ||||||||    
T  45774132 aagtataattttaagtggttcatcgagaaacaattctattgatgtatatctaaaattgaatcatatacat 45774063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 749
Target Start/End: Complemental strand, 24913878 - 24913787
Alignment:
Q  658 tcacttttctacccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatc 749  Q
    |||||||| | |||||||||||||||| ||||  ||||| | |||||| ||||||||||  ||||||||| | || |||| | |||||||||    
T  24913878 tcacttttttccccttcatcttttctaggatacgtatctgtgaaatatcttataagtatccttgtgtatctgcggagtatacaataagtatc 24913787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 749
Target Start/End: Complemental strand, 24917563 - 24917472
Alignment:
Q  658 tcacttttctacccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatc 749  Q
    |||||||| | |||||||||||||||| ||||  ||||| | |||||| ||||||||||  |||||||||   || |||||| |||||||||    
T  24917563 tcacttttttccccttcatcttttctaggatacgtatctgtgaaatatcttataagtatccttgtgtatctacggagtatccaataagtatc 24917472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 622
Target Start/End: Complemental strand, 24917641 - 24917590
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttga 622  Q
    ||||||||||||| ||| ||||||||||||| ||||| ||||||||| ||||    
T  24917641 attttaagtggttcatcgagaaacaattctactaatgtatatctaaaattga 24917590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 726
Target Start/End: Complemental strand, 44987389 - 44987224
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagca--atgtcac 661  Q
    |||||| ||||||||| ||| ||  |||||||||||||   ||| ||||||||| |||| | || ||||| || | ||||||||| || ||  || ||||    
T  44987389 aagtataattttaagtagttcattgagaaacaattctaccgatgcatatctaaaattgaatcatgtacatctcgagtgaatttttacaacattatctcac 44987290  T
Q  662 ttttct-acccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtat 726  Q
    |||| | ||| ||||||||||||| ||||  ||| | | ||| || ||||||||||||||||||||    
T  44987289 tttttttacctttcatcttttctaggatacgtatttgtgaaacatcttataagtatttttgtgtat 44987224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 2295497 - 2295428
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| |||||||||| || ||| ||||||||||||||| ||| |||||| || ||||||  |||||||    
T  2295497 aagtataattttaagtgtttcatcgagaaacaattctattgatgaatatcttaaattgagtcctatacat 2295428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 727
Target Start/End: Complemental strand, 26565078 - 26564912
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagca--atgtcac 661  Q
    |||||| ||||||||||||||||| |||||||||| || | ||  ||||||||| |||| | ||||||||| | ||||||| ||| || ||  || ||||    
T  26565078 aagtataattttaagtggtttatcaagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctcac 26564979  T
Q  662 ttttctacccttcatc-ttttctacgataaatatcttttaaatattttataagtatttttgtgtatc 727  Q
    |||| ||| ||||||| ||||||| |||| |||||||| || ||| |||||||||| ||||||||||    
T  26564978 ttttttactcttcatctttttctaggatagatatctttgaagtatcttataagtatctttgtgtatc 26564912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 633
Target Start/End: Original strand, 29231077 - 29231146
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| |||||||||| || ||| ||||||||||||||| ||| ||||||||| |||||| ||||||||    
T  29231077 aagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacat 29231146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 681
Target Start/End: Original strand, 2627961 - 2628081
Alignment:
Q  563 aaagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tca 660  Q
    ||||||| ||||||||||||| ||| | ||||||||||| | ||| ||||||||| |||| | |||||||| || | ||||| ||| || || ||  |||    
T  2627961 aaagtataattttaagtggttcatcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctca 2628060  T
Q  661 cttttctacccttcatctttt 681  Q
    ||||| ||| |||||||||||    
T  2628061 cttttttactcttcatctttt 2628081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 684
Target Start/End: Original strand, 32076536 - 32076658
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| | |||||||||||| || |||||||||| || | ||| ||||||||| ||||  |||| |||| || | |||| |||| || || ||  ||||    
T  32076536 aagtataaatttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctactgaaattttacaacattgtctcac 32076635  T
Q  662 ttttctacccttcatcttttcta 684  Q
    |||| ||||||||||||||||||    
T  32076636 ttttttacccttcatcttttcta 32076658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 748
Target Start/End: Original strand, 12312030 - 12312210
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatgtc---acttttct 667  Q
    |||| |||||||| ||| ||||||||||||||| ||| ||||||||| |||| || |||||||||||| | | ||||  || || ||||   |||||  |    
T  12312030 atttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacatttccacttatttttcacaacattgtctttactttctt 12312129  T
Q  668 acccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtat 748  Q
    ||||||||| ||||||| |||| |||||||| || ||| ||||||||||  ||||||| |  ||| ||||| |||||||||    
T  12312130 acccttcattttttctaggatacatatctttgaagtatcttataagtatcattgtgtaactatggagtatcttataagtat 12312210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 681
Target Start/End: Original strand, 688079 - 688198
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| ||||||||||||| ||| |||||||||| |||| ||| ||||||||| |||| | |||||||| |  | ||||||||| ||||| ||  |||     
T  688079 aagtataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatctataatgaatttttacagcattgtctcat 688178  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| ||| |||||||||||    
T  688179 ttttttactcttcatctttt 688198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 33704418 - 33704521
Alignment:
Q  10 tgtgatgtatgtgttttatctattaaaaat-------aaataaataagtgaggaaaagtatatggagctatagtcccacgtagctccaacatggttccgc 102  Q
    |||| |||||||||||||||||||||||||       ||||||| ||   ||| |||| || ||||||||||||||||| |||||||||||||| ||||     
T  33704418 tgtgctgtatgtgttttatctattaaaaataaataaaaaataaaaaatatagggaaagcatgtggagctatagtcccacatagctccaacatggatccgt 33704517  T
Q  103 ccct 106  Q
    ||||    
T  33704518 ccct 33704521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 681
Target Start/End: Complemental strand, 10229568 - 10229449
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| ||||||||||||| ||| | ||||||||||| | ||| ||||||| | |||| | |||||||| || || |||| |||||| || ||  ||||    
T  10229568 aagtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcac 10229469  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| ||| |||||||||||    
T  10229468 ttttttactcttcatctttt 10229449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 633
Target Start/End: Original strand, 2032355 - 2032425
Alignment:
Q  564 aagtatgattttaagtggtttatct-agaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| |||||||||| || |||  ||||||||||||||| ||| ||||||||| |||||| ||||||||    
T  2032355 aagtataattttaagtgtttcatccgagaaacaattctattgatgcatatctaaaattgagtcatatacat 2032425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 646
Target Start/End: Complemental strand, 8486064 - 8485982
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaattt 646  Q
    |||||| |||||||| |||| ||| ||||||||||||| | ||| ||||||||| |||| | |||||||| | || |||||||    
T  8486064 aagtataattttaagcggttcatcaagaaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaattt 8485982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 618
Target Start/End: Complemental strand, 10567402 - 10567348
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaac 618  Q
    |||||| |||||||||| || ||| ||||||||||||||| ||| ||||||||||    
T  10567402 aagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaac 10567348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 571 - 749
Target Start/End: Complemental strand, 36467323 - 36467143
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcacttttcta 668  Q
    ||||||||||||| ||| |||||||||| || | ||| ||||||||| |||| | ||||||||||| | ||||||||| || || ||  |||||||  ||    
T  36467323 attttaagtggttcatcgagaaacaattttacttatgcatatctaaaattgaatcatatacatttcaactgaatttttacaacattgtctcactttctta 36467224  T
Q  669 cccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatc 749  Q
    ||| ||||| | ||||   || |||||| | || ||| |||||||||| |||||||||| ||||  |||||||||||||||    
T  36467223 cccgtcatcatctctagtttacatatctgtgaagtatcttataagtatctttgtgtatctgtggattatcctataagtatc 36467143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 564 - 681
Target Start/End: Complemental strand, 7017958 - 7017839
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| ||||||||||||||||| |||||||||||||   ||| ||||||||| |||| | |||||||| || | ||||||||| || || ||  ||||    
T  7017958 aagtataattttaagtggtttatcgagaaacaattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcac 7017859  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| |||||||||||||||    
T  7017858 ttttttacccttcatctttt 7017839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 34190177 - 34190270
Alignment:
Q  9 gtgtgatgtatgtgttttatctattaaaaataaataaataagtgaggaaaagtatatggagctatagtcccacgtagctccaacatggttccgcc 103  Q
    ||||| || ||||||| ||||||||||||| ||| |||||| |  |||||||||| |||||||||||| |||| || ||||||||||| ||||||    
T  34190177 gtgtgttgaatgtgttctatctattaaaaa-aaagaaataaatagggaaaagtatgtggagctatagttccacataactccaacatggatccgcc 34190270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 750
Target Start/End: Complemental strand, 35298552 - 35298369
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcacttttcta 668  Q
    ||||||||||||| ||| ||||| ||||||||| ||| || |||||| |||| |||||||||| || | ||||||||| || || ||  |||||||| ||    
T  35298552 attttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcactttttta 35298453  T
Q  669 cccttcatc--ttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatcc 750  Q
    || || |||  |||||||  |||  ||| | | || ||| |||||| ||| |||||||||| |||| ||||| |||||||||||    
T  35298452 ccttttatcttttttctagaatacgtatatgtgaagtatcttataaatatctttgtgtatctgtggagtatcatataagtatcc 35298369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 681
Target Start/End: Original strand, 42794773 - 42794892
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| |||||||||| || ||| ||||||||||||||| ||| ||||||||| |||||| | |||||| |  | ||||||||| || || ||  ||||    
T  42794773 aagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctataatgaatttttacaacattgtctcac 42794872  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| ||| |||||||||||    
T  42794873 ttttttactcttcatctttt 42794892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 750
Target Start/End: Complemental strand, 17328804 - 17328641
Alignment:
Q  590 gaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatgtc--acttttctacccttcatctttt-ctacg 686  Q
    |||||||||| | ||||| ||||||||| |||| | |||||||| ||   ||||||||| || |  ||||  |||||||||| ||||||||||| ||| |    
T  17328804 gaaacaattcgactaatgcatatctaaaattgaatcatatacatctctcctgaatttttacaaccttgtctcacttttctacgcttcatcttttcctagg 17328705  T
Q  687 ataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatcc 750  Q
    ||| |||| | | || ||| ||||||||||  |||||||||  ||| ||||| |||||||||||    
T  17328704 atacatatatgtgaagtatcttataagtatcattgtgtatctatggagtatcatataagtatcc 17328641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 632
Target Start/End: Complemental strand, 40498744 - 40498676
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatataca 632  Q
    |||||| ||||||||||||| ||| ||||||||||||| | ||| ||||||||| |||| | |||||||    
T  40498744 aagtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 640
Target Start/End: Complemental strand, 2789025 - 2788950
Alignment:
Q  565 agtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccatt 640  Q
    ||||| ||||||| |||||| || |||||||||| || ||||| |||| |||| |||| | |||||||||||||||    
T  2789025 agtataattttaaatggtttttccagaaacaattttactaatgcatatttaaaattgaatgatatacatttccatt 2788950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 614
Target Start/End: Complemental strand, 5913075 - 5913032
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatct 614  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||    
T  5913075 attttaagtggtttatcaagaaacaattttattaatgcatatct 5913032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 680
Target Start/End: Original strand, 37272909 - 37273027
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatgtc--ac 661  Q
    |||||| ||||||||||||| ||| | |||||||| |||| ||| || |||||| |||| | |||||||| || | ||||||||| || || ||||  ||    
T  37272909 aagtataattttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaacattgtcttac 37273008  T
Q  662 ttttctacccttcatcttt 680  Q
    |||| |||| |||||||||    
T  37273009 ttttttacctttcatcttt 37273027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 726
Target Start/End: Original strand, 38682928 - 38683086
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagca--atgtcacttttcta 668  Q
    ||||||||||||| ||| ||||||||||||||| ||| ||||||||| |||| | |||||||| |||| | |||| || || ||  || ||| |||| ||    
T  38682928 attttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatatacatctccactaaattgttacaacattatttcattttttta 38683027  T
Q  669 cccttcatc-ttttctacgataaatatcttttaaatattttataagtatttttgtgtat 726  Q
    ||||||||| ||||||| |||| |||||| | || ||||||| |||||| ||| |||||    
T  38683028 cccttcatctttttctaggatacatatctgtgaagtattttagaagtatctttatgtat 38683086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 750
Target Start/End: Complemental strand, 14287142 - 14286953
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| ||||||||||||| | |  |||||||||||| ||||| ||||||||| |||  | |||||||| ||   ||||||||| || || ||  ||||    
T  14287142 aagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgcatcatatacatctctcctgaatttttacaacattgtctcac 14287043  T
Q  662 ttttctacccttcatc-ttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatcc 750  Q
    |||| | ||||||||| ||||||| |||| |||| |   || ||| ||||||||||  |||||||||  ||| ||||| |||||||||||    
T  14287042 tttttttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatcattgtgtatctatggagtatcatataagtatcc 14286953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 681
Target Start/End: Complemental strand, 13558605 - 13558486
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| ||||||||||||| ||| |||||||||| || | ||| ||||||||| |||| | ||||||||  | ||||||| ||| || || ||  ||||    
T  13558605 aagtataattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgtctcac 13558506  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| ||| |||||||||||    
T  13558505 ttttttactcttcatctttt 13558486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 632
Target Start/End: Original strand, 31513617 - 31513685
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatataca 632  Q
    |||||| ||||||| || || ||| ||||||||||||||| ||| ||||||||| |||||| |||||||    
T  31513617 aagtataattttaactgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatataca 31513685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 16122905 - 16122830
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaattt 646  Q
    |||| |||||||| ||| |||||||||| || | ||| ||||||||| |||| | ||||||||||||| |||||||    
T  16122905 atttgaagtggttcatcaagaaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaattt 16122830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 40694054 - 40693985
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| |||||||||| || ||| | ||||||||||||| ||| ||||||||  |||||| ||||||||    
T  40694054 aagtataattttaagtgtttcatcgaaaaacaattctattgatgcatatctaatattgagtcatatacat 40693985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 50726775 - 50726706
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| |||||||| | || ||| ||||||||||||||| | | ||||||||| |||||| ||||||||    
T  50726775 aagtataattttaagcgtttcatcgagaaacaattctattgacgcatatctaaaattgagtcatatacat 50726706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 744
Target Start/End: Complemental strand, 40614935 - 40614762
Alignment:
Q  573 tttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcacttttctacc 670  Q
    ||||||||||| ||| |||||||| |||| | ||| ||||||||| ||||   |||||||| || | ||||||||| ||  | ||  |||||||| ||||    
T  40614935 tttaagtggttcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcacttttttacc 40614836  T
Q  671 cttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataa 744  Q
     ||||||||||||| ||||  ||||| | || ||| |||||||||| |||||||||| |||  |||||| ||||    
T  40614835 tttcatcttttctaagatacgtatctatgaagtatcttataagtatctttgtgtatctgtgaagtatccgataa 40614762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 633
Target Start/End: Original strand, 7629196 - 7629265
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| |||||||||| || ||| ||||||||||||||| ||| ||||||||| |||||| ||||||||    
T  7629196 aagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacat 7629265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 681
Target Start/End: Complemental strand, 29324197 - 29324085
Alignment:
Q  571 attttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcacttttcta 668  Q
    ||||||||||||| ||| |||||||||| |||| ||| ||||||||| |||| | |||||||| |  |||||| |||| || || ||  |||||||| ||    
T  29324197 attttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatctttattgaagttttacaacattgcctcactttttta 29324098  T
Q  669 cccttcatctttt 681  Q
    | |||||||||||    
T  29324097 ctcttcatctttt 29324085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 681
Target Start/End: Complemental strand, 45472722 - 45472603
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatgtc--ac 661  Q
    |||||| |||||| ||| || ||| ||||||||||||| | ||| ||||||||| |||| | |||||||| || ||||||| ||| || || ||||  ||    
T  45472722 aagtataattttacgtgattcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgtctaac 45472623  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| ||| |||||||||||    
T  45472622 ttttttactcttcatctttt 45472603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 681
Target Start/End: Complemental strand, 32835361 - 32835241
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttg--agttatatacatttccattgaatttttgcagcaatg--tc 659  Q
    |||||| ||||||||||||| ||  || |||||||||||||||| ||||||||| |||  | | |||||||| || | ||||||||| || || ||  ||    
T  32835361 aagtataattttaagtggttcattgagcaacaattctattaatgcatatctaaaattgaaaatcatatacatctcaactgaatttttacaacattgtctc 32835262  T
Q  660 acttttctacccttcatctttt 681  Q
    |||||| |||||||||||||||    
T  32835261 actttt-tacccttcatctttt 32835241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 750
Target Start/End: Complemental strand, 20819183 - 20819133
Alignment:
Q  700 aaatattttataagtatttttgtgtatccgtggcgtatcctataagtatcc 750  Q
    ||||||||||||||||| | ||||||||||| | ||||| |||||||||||    
T  20819183 aaatattttataagtatctatgtgtatccgtcgagtatcttataagtatcc 20819133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 633
Target Start/End: Original strand, 38489726 - 38489795
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| ||||||||||||| ||| |||||||||| || | ||| ||||||||| |||| | ||||||||    
T  38489726 aagtataattttaagtggttcatcgagaaacaattatagttatgcatatctaaaattgaatcatatacat 38489795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 751
Target Start/End: Original strand, 52695659 - 52695752
Alignment:
Q  658 tcacttttctacccttcatcttttctacgataaatatcttttaaatattttataagtatttttgtgtatccgtggcgtatcctataagtatcca 751  Q
    ||||||||  |||||||||||||| || ||||| ||||| | |||||| ||||||| || |||||||||  |||  |||||||| | |||||||    
T  52695659 tcactttttgacccttcatcttttataggataagtatctgtgaaatatcttataagcatctttgtgtatttgtgaagtatcctacatgtatcca 52695752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 633
Target Start/End: Original strand, 42040456 - 42040525
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| |||||||||| || ||| ||| ||||||||||| ||| ||||||||| |||||| ||||||||    
T  42040456 aagtataattttaagtgtttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacat 42040525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 633
Target Start/End: Original strand, 45648223 - 45648292
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacat 633  Q
    |||||| ||||||||||||| | | ||||||||||||||| ||| ||||||||| |||| | ||||||||    
T  45648223 aagtataattttaagtggttcaccgagaaacaattctattgatgcatatctaaaattgaatcatatacat 45648292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 681
Target Start/End: Original strand, 47843766 - 47843885
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatgtc--ac 661  Q
    |||||| |||||||||||||  ||  ||||||||| |||| ||| ||||||||| |||| | |||||||| || | ||| ||||| || || ||||  ||    
T  47843766 aagtataattttaagtggttcgtcaggaaacaattttattgatgcatatctaaaattgaatcatatacatctctactgagtttttacaacattgtctaac 47843865  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| |||||||||||||||    
T  47843866 ttttttacccttcatctttt 47843885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 622
Target Start/End: Complemental strand, 40836511 - 40836453
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttga 622  Q
    |||||| ||||||||||||| ||| ||||||||||||| | ||| ||||||||| ||||    
T  40836511 aagtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattga 40836453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 572 - 681
Target Start/End: Complemental strand, 8018 - 7907
Alignment:
Q  572 ttttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcacttttctac 669  Q
    |||| |||| || ||| ||||||||||||||| ||| ||||||||| |||||| |||||||| |  | ||||||||| || || ||  |||||||| |||    
T  8018 tttttagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttac 7919  T
Q  670 ccttcatctttt 681  Q
     |||||||||||    
T  7918 tcttcatctttt 7907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 681
Target Start/End: Complemental strand, 6283 - 6164
Alignment:
Q  564 aagtatgattttaagtggtttatctagaaacaattctattaatggatatctaaacttgagttatatacatttccattgaatttttgcagcaatg--tcac 661  Q
    |||||| ||||||||||||| ||| | ||||||||||| | ||| ||||||| | |||| | |||||||| || || |||| |||||| || ||  ||||    
T  6283 aagtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcac 6184  T
Q  662 ttttctacccttcatctttt 681  Q
    |||| ||| |||||||||||    
T  6183 ttttttactcttcatctttt 6164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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