View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040-Insertion-7 (Length: 590)

Name: NF5040-Insertion-7
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040-Insertion-7
NF5040-Insertion-7
[»] chr2 (5 HSPs)
chr2 (7-458)||(43106765-43107216)
chr2 (20-206)||(43103794-43103980)
chr2 (352-436)||(2958520-2958603)
chr2 (357-438)||(10740445-10740525)
chr2 (531-590)||(43106633-43106692)
[»] chr7 (2 HSPs)
chr7 (355-426)||(21577704-21577773)
chr7 (357-421)||(34111898-34111961)
[»] scaffold0014 (1 HSPs)
scaffold0014 (369-438)||(73430-73499)
[»] chr6 (1 HSPs)
chr6 (369-438)||(28541948-28542016)
[»] chr4 (2 HSPs)
chr4 (369-438)||(35498867-35498935)
chr4 (378-438)||(56268918-56268977)
[»] chr3 (3 HSPs)
chr3 (357-438)||(6822848-6822931)
chr3 (358-438)||(9189203-9189282)
chr3 (358-436)||(33641233-33641310)
[»] chr1 (1 HSPs)
chr1 (376-436)||(894929-894988)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 458
Target Start/End: Complemental strand, 43107216 - 43106765
Alignment:
Q  7 actttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatctacatggttggagagatggagaagagtttgagaaagttatgcttca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  43107216 actttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatgtacatggttggagagatggggaagagtttgagaatgttatgcttca 43107117  T
Q  107 tatcatnnnnnnncctaatattggtaaagggaacattgttgatccaaaaattatctctgttgattgcaagttggggacaatttcaattgatgctaataaa 206  Q
    ||||||       |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43107116 tatcatcaaaaaacctaatattggtaaagggaacactgttgatccaaaaattatctctgttgattgcaagttggggacaatttcaattgatgctaataaa 43107017  T
Q  207 tctttcattgaagccatcccagctcctctttaactattggtccaaaactaatattgtatttcttgtggcttgtcaacttcttaaactttcttgttgatct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43107016 tctttcattgaagccatcccagctcctctttaactattggtccaaaactaatattgtatttcttgtggcttgtcaacttcttaaactttcttgttgatct 43106917  T
Q  307 agcagaaaatctgaaaattaatgtacgaattttgctaacaaatgtcacttgttaagtaaatcaaaaataatagttttacattgacagctacaatttttca 406  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||    
T  43106916 agcagaaaatctgaaaattaatgtacgaattttactaacaaatgtcacttgttaagtaaatcaaaaatagtagttttacattgataactacaatttttca 43106817  T
Q  407 aacttttaaaaagttaaattgatcactttttaatcacatactatcaatcaga 458  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43106816 aacttttaaaaagttaaattgatcactttttaatcacatacaatcaatcaga 43106765  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 43103980 - 43103794
Alignment:
Q  20 tgattttgtctctaaaaattctaaagacataaaggcacatctacatggttggagagatggagaagagtttgagaaagttatgcttcatatcatnnnnnnn 119  Q
    |||||| || ||||||||||| || ||||| ||||||||| |||||||||||||||||||||| ||| ||||||| ||| |||||||||| ||           
T  43103980 tgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggagcttgagaatgttctgcttcatattatcaacaaa 43103881  T
Q  120 cctaatattggtaaagggaacattgttgatccaaaaattatctctgttgattgcaagttggggacaatttcaattgatgctaataaa 206  Q
     ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||  || |||||||||||| |||||    
T  43103880 gctaatattggtaaagggaacattgttggtccaaaaattatctcagttgattgcaagatggggaatatctcaattgatgctcataaa 43103794  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 2958603 - 2958520
Alignment:
Q  352 cacttgttaagtaaatcaaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcactttt 436  Q
    ||||||||||| |||  ||||||| |||||||||||||| |  ||||||||| |||||||||||||||||||||| || ||||||    
T  2958603 cacttgttaaggaaactaaaaatagtagttttacattgaaaaatacaatttt-caaacttttaaaaagttaaattcataactttt 2958520  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 10740525 - 10740445
Alignment:
Q  357 gttaagtaaatcaaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcacttttta 438  Q
    |||||| |||||||||||| ||||||||||||||    |||||||||| ||||||||||||| || |||| |||||||||||    
T  10740525 gttaagaaaatcaaaaatagtagttttacattgaagattacaattttt-aaacttttaaaaaattgaattcatcacttttta 10740445  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 43106692 - 43106633
Alignment:
Q  531 gctgtttaagactatatattttcctctcaaaagnnnnnnnngtactatgtatatttcaaa 590  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  43106692 gctgtttaagactatatattttcctctcaaaagaaaaaaaagtactatgtatatttcaaa 43106633  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 426
Target Start/End: Complemental strand, 21577773 - 21577704
Alignment:
Q  355 ttgttaagtaaatcaaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaatt 426  Q
    |||||||| |||||||||||| |||||||||||||  | ||||||||||  |||||||||||||||||||||    
T  21577773 ttgttaagaaaatcaaaaatactagttttacattggaaactacaatttt--aaacttttaaaaagttaaatt 21577704  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 34111961 - 34111898
Alignment:
Q  357 gttaagtaaatcaaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagtt 421  Q
    |||||| ||| |||||||| ||||||| |||||| |  |||||||||| ||||||||||||||||    
T  34111961 gttaaggaaaccaaaaatagtagttttgcattgaaaattacaattttt-aaacttttaaaaagtt 34111898  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 73430 - 73499
Alignment:
Q  369 aaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcacttttta 438  Q
    ||||||| |||||||||||||| |  || |||||||||||||||||||||||| |||| || ||||||||    
T  73430 aaaaatagtagttttacattgaaaattataatttttcaaacttttaaaaagttgaattcataacttttta 73499  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 28541948 - 28542016
Alignment:
Q  369 aaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcacttttta 438  Q
    ||||||| || ||||||||||| | |||||||||| ||||||||||||||||| |||| |||||||||||    
T  28541948 aaaaatagtaattttacattgaaaactacaatttt-caaacttttaaaaagttgaattcatcacttttta 28542016  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 438
Target Start/End: Complemental strand, 35498935 - 35498867
Alignment:
Q  369 aaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcacttttta 438  Q
    |||||||||||||||||||||| | ||||||||||| |||| ||||||||||| |||  |||||||||||    
T  35498935 aaaaataatagttttacattgaaaactacaattttt-aaacatttaaaaagttgaatccatcacttttta 35498867  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 56268918 - 56268977
Alignment:
Q  378 agttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcacttttta 438  Q
    ||||||||||||  | |||||||||| |||||||| |||||||| |||| |||||||||||    
T  56268918 agttttacattggaaactacaatttt-caaactttaaaaaagttgaatttatcacttttta 56268977  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 6822931 - 6822848
Alignment:
Q  357 gttaagtaaatcaaaaataatagttttacattgacagctacaat--ttttcaaacttttaaaaagttaaattgatcacttttta 438  Q
    |||||| ||| ||||||||||| ||||||||||| | |||| |   |||| |||||||||||||||| |||| |||||||||||    
T  6822931 gttaaggaaaccaaaaataataattttacattgaaaactactacaattttaaaacttttaaaaagttgaattcatcacttttta 6822848  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 438
Target Start/End: Original strand, 9189203 - 9189282
Alignment:
Q  358 ttaagtaaatcaaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcacttttta 438  Q
    ||||| ||| |||||||| ||||||||||| || | |||||| |||||| || ||||||||||| |||| |||||||||||    
T  9189203 ttaaggaaaccaaaaatagtagttttacatagaaaactacaa-ttttcacacatttaaaaagttgaattcatcacttttta 9189282  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 33641233 - 33641310
Alignment:
Q  358 ttaagtaaatcaaaaataatagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcactttt 436  Q
    ||||| ||| |||||||| ||||||||| |||| | ||||||||||  |||||||||||||||| |||| |||| ||||    
T  33641233 ttaaggaaaacaaaaatagtagttttacgttgaaaactacaatttta-aaacttttaaaaagttgaatttatcattttt 33641310  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 894929 - 894988
Alignment:
Q  376 atagttttacattgacagctacaatttttcaaacttttaaaaagttaaattgatcactttt 436  Q
    ||||||||||||||  | |||||||||| ||||||||||||||||| |||| |||||||||    
T  894929 atagttttacattggaaactacaatttt-caaacttttaaaaagttgaattcatcactttt 894988  T

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