View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040-Insertion-8 (Length: 579)
Name: NF5040-Insertion-8
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 30890949 - 30890583
Alignment:
| Q |
8 |
aaatttgctctaatttcgtaataatcagttcaaatcacatcagacaaagaatgttagattaagatcatgaaccatggttttgtcaacaacatacatataa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30890949 |
aaatttgctctaatttcgtaataatcagttcaaatcacatcagacaaagaatgttagattaagatcatgaaccaatgttttgtcaacaacatacatataa |
30890850 |
T |
|
| Q |
108 |
actatgtacaaagtgtgctacnnnnnnnnnnnnnnnnnnnnnngaatttgatgaacctttgaattccataatctttcaatgcatatttgattgtgctttc |
207 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30890849 |
actatgtacaaagtgtgctacaaaaattaaaagaaaagaaaaagaatttgatgaacctttgaattccataatctttcaatgcatatttgattgtgctttc |
30890750 |
T |
|
| Q |
208 |
atcggcattcattgctcgaagttcatctannnnnnnctccaacaaatccatttctgtttgaatgtttaattttgaggttccttttagagtttgacccatc |
307 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30890749 |
atcggcattcattgctcgaagttcatctatttttttctccaacaaatccatttctgtttgaatgtttaattttgaggttccttttaaagtttgacccatc |
30890650 |
T |
|
| Q |
308 |
tcaaatggtttctcttgtaaaatttcatctccatcgttggcctctccacatacatatgctagttaat |
374 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
30890649 |
tcaaatggtttctcttgtaaaatttcttctccattattggcctctccacatacatatgctagttaat |
30890583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 30895774 - 30895654
Alignment:
| Q |
8 |
aaatttgctctaatttcgtaataatcagttcaaatcacatcagacaaagaatgttagattaagatcatgaaccatggttttgtcaacaacatacatataa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30895774 |
aaatttgctctaatttcgtaataatcagttcaaatcacatcagacaaagaatgttagattaagatcatgaaccatggttttgtcaacaacatacatataa |
30895675 |
T |
|
| Q |
108 |
actatgtacaaagtgtgctac |
128 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
30895674 |
actatgtacaaagtgtgctac |
30895654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 451 - 579
Target Start/End: Complemental strand, 30890061 - 30889933
Alignment:
| Q |
451 |
tttcccttgctttttaggctaccttatatgctttttgttctagagatttacctgttgatatgtggacaaaaacttttatattgcaacannnnnnngcaat |
550 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30890061 |
tttcccttgcattttaggctaccttatatgttttttgccctagaaatttacctgttgatatgtggacaaaaacttttatattgcaacatttctttgcaaa |
30889962 |
T |
|
| Q |
551 |
gtttaagacatgtaaaggtcccattgtat |
579 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
30889961 |
gtttaagacatgtaaaggtcccattgtat |
30889933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 151 - 331
Target Start/End: Original strand, 19894447 - 19894627
Alignment:
| Q |
151 |
gaatttgatgaacctttgaattccataatctttcaatgcatatttgattgtgctttcatcggcattcattgctcgaagttcatctannnnnnnctccaac |
250 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||| | ||||| | |
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| T |
19894447 |
gaattcgatgaacctttcaattccataatctttcaatgcatatttgagagttttttcatccacattcattgctcgtagttcatcaaattttttctccagc |
19894546 |
T |
|
| Q |
251 |
aaatccatttctgtttgaatgtttaattttgaggttccttttagagtttgacccatctcaaatggtttctcttgtaaaatt |
331 |
Q |
| |
|
|||| ||||||||| || |||| || |||||| || |||||||| | ||||||||||||||||||||||||||| |||||| |
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|
| T |
19894547 |
aaattcatttctgtgtgtatgtctagttttgaagtcccttttagggattgacccatctcaaatggtttctcttgaaaaatt |
19894627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 155 - 331
Target Start/End: Complemental strand, 19874869 - 19874693
Alignment:
| Q |
155 |
ttgatgaacctttgaattccataatctttcaatgcatatttgattgtgctttcatcggcattcattgctcgaagttcatctannnnnnnctccaacaaat |
254 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||| || | ||||| ||||||| ||||||||||| | |||||| ||| ||||||||||| |
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| T |
19874869 |
ttgatgaacctttccattccataatccttcattgcacatgttattgtattttcatccacattcattgcttggagttcagctaattttctctccaacaaat |
19874770 |
T |
|
| Q |
255 |
ccatttctgtttgaatgtttaattttgaggttccttttagagtttgacccatctcaaatggtttctcttgtaaaatt |
331 |
Q |
| |
|
||||||| || |||| |||||||||||| |||||||||| || ||||||||||||||| |||||| |||||||| |
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|
| T |
19874769 |
tcatttcttcatgtatgtctaattttgaggtcccttttagagattcacccatctcaaatgggttctctcgtaaaatt |
19874693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 324
Target Start/End: Complemental strand, 19532364 - 19532188
Alignment:
| Q |
151 |
gaatttgatgaacctttgaattccataatctttcaatgcatatttgattgtgctttcatcggcattcattgctcgaagttcatctannnnnnnctccaac |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||| ||||||||||||| | |||||||| ||||| | |
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|
| T |
19532364 |
gaatttgatgaacctttcaattccataatctttcaacgcatgcttgattgttttttcatccacattcattgctcgtaattcatctaattttttctccagc |
19532265 |
T |
|
| Q |
251 |
aaatccatttctgtttgaatgtttaattttgaggttccttt-tagagttt---gacccatctcaaatggtttctcttg |
324 |
Q |
| |
|
|||| ||||||||| || |||| || |||| || |||||| ||||| || |||||||||||||||| |||||||| |
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| T |
19532264 |
aaattcatttctgtgtgtatgtctagtttt-agagtcctttctagagattgacgacccatctcaaatggcttctcttg |
19532188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 369
Target Start/End: Complemental strand, 19657238 - 19657113
Alignment:
| Q |
244 |
ctccaacaaatccatttctgtttgaatgtttaattttgaggttccttttagagtttgacccatctcaaatggtttctcttgtaaaatttcatctccatcg |
343 |
Q |
| |
|
||||||||||| ||||||||| || |||| ||||||||| || |||||||| | |||| |||||| |||||| ||||| ||||| | || ||| || |
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| T |
19657238 |
ctccaacaaattcatttctgtgtgtatgtctaattttgaagtcccttttagggattgatccatcttgaatggtgtctctcttaaaagtgtatgtccttct |
19657139 |
T |
|
| Q |
344 |
ttggcctctccacatacatatgctag |
369 |
Q |
| |
|
|| || ||||| |||||||||||||| |
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|
| T |
19657138 |
ttagcatctccgcatacatatgctag |
19657113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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