View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040-Insertion-9 (Length: 532)
Name: NF5040-Insertion-9
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 532
Target Start/End: Original strand, 7565803 - 7566329
Alignment:
| Q |
8 |
cacaccactgttaatacctcatctggtagcgagtatgacacagtgcagtacaacagtgatatccagaagatgagaaagacagtgttttccagccatgaat |
107 |
Q |
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| T |
7565803 |
cacaccactgttaatacctcatctggtagcgagtatgacacagtgcagtacaacagtgatatgcagaagatgagaaagacagtgttttccagccatgaat |
7565902 |
T |
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| Q |
108 |
ctaacaccagcagcttcaccagtagtggcgagatgggccaaactccaccaaagctgaagactccacaacaattgccttaagctgttaatcatacatgtgg |
207 |
Q |
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| T |
7565903 |
ctaacaccagcagcttcaccagtagtggcgagatgggccaaactccaccaaagctgaagactccacaacaattgccttaagctgttaatcatacatgtgg |
7566002 |
T |
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| Q |
208 |
aaaggattagagggacaaaaattc-aaggggttgcttttgtttgatgtatatcgtttccttgtgatgggaagtaatataccattctgtggagaatttgag |
306 |
Q |
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| T |
7566003 |
aaaggattagagggacaaaaattcaaaggggttgcttttgtttgatgtatattgtttccttgtgatgggaagtaatatatcattctgtggagaatttgag |
7566102 |
T |
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| Q |
307 |
tttgaggctctgtttcggggtgtatttgaggtgtaagtttatgccaacgtgacatatttcattaatttgttcactggttattatgtaatgtaataatgat |
406 |
Q |
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| T |
7566103 |
tttgaggctctg-ttcggggtgtatttgaggtgtaagtttatgccaacgtgacatatttctttaatttgttcactggttattatgtaatgtaataatgat |
7566201 |
T |
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| Q |
407 |
tatacataggcataccttggaatggagtgcatagacatgattaactactctgtattattgaatcaagtttctttctatacgtattt--tgtttctttcac |
504 |
Q |
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| T |
7566202 |
tatacataggcataccttggaatggagtgcatagacatgattaactactctgtattattgaatcaagtttctttctatacgtattttgtgtttctttcac |
7566301 |
T |
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| Q |
505 |
cggtgaaaaaggtcttgaagttagggta |
532 |
Q |
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| T |
7566302 |
tggtgaaaaaggtcttgaagttagggta |
7566329 |
T |
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