View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040_high_2 (Length: 530)

Name: NF5040_high_2
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040_high_2
NF5040_high_2
[»] chr8 (13 HSPs)
chr8 (11-232)||(29245988-29246205)
chr8 (342-512)||(29245703-29245873)
chr8 (11-141)||(29254311-29254441)
chr8 (15-110)||(29224386-29224481)
chr8 (18-97)||(29364704-29364783)
chr8 (11-138)||(29213783-29213910)
chr8 (365-497)||(29254029-29254161)
chr8 (460-512)||(29285769-29285821)
chr8 (476-512)||(29311079-29311115)
chr8 (472-512)||(29340557-29340597)
chr8 (477-512)||(29357401-29357436)
chr8 (463-509)||(15247150-15247196)
chr8 (476-512)||(29215061-29215097)
[»] chr3 (2 HSPs)
chr3 (448-512)||(43815075-43815139)
chr3 (11-79)||(43814554-43814619)
[»] chr2 (4 HSPs)
chr2 (439-512)||(30931063-30931136)
chr2 (466-512)||(30910155-30910201)
chr2 (441-512)||(30919578-30919649)
chr2 (21-150)||(30928679-30928808)
[»] chr5 (2 HSPs)
chr5 (33-133)||(14496644-14496744)
chr5 (460-512)||(14497577-14497629)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 4e-95; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 29246205 - 29245988
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29246205 cagagacgatccatatttgacccaagctgaattcatttgggctttcaacatggggggcccacacgtttattatagcctgtgctccatagtatatatcccc 29246106  T
Q  111 tctcacatatccaactgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaacatacttttttgt 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  29246105 tctcacaaatccaactgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaccatacatttttgt 29246006  T
Q  211 acagttaatgcgtaaggagact 232  Q
    ||    ||||||||||||||||    
T  29246005 ac----aatgcgtaaggagact 29245988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 342 - 512
Target Start/End: Complemental strand, 29245873 - 29245703
Alignment:
Q  342 tttgagagacaaaatatataagtttctatgattgcataccagatgtccattttgaattgagtccgttctaaatccgtttgccttttttccaaagctatca 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  29245873 tttgagagacaaaatatataagtttctatgattgcataccagatgtccattttgaattgtgtccgttctaaatccgtttgcctttcttccaaaactatca 29245774  T
Q  442 atagatccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29245773 atagatccagctcttgagatgtcttcttctgttgttcttctaattggaattgttccttcaggacatgattc 29245703  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 29254441 - 29254311
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    ||||||||||||| ||||| |||||||| ||||||||| || |||||||||||||||||||||| |||||  ||||||||||||||| |||| |||| ||    
T  29254441 cagagacgatccacatttgtgccaagcttaattcatctaggttttcaacatggggggcccacacatttatggtagcctgtgctccatggtatctatctcc 29254342  T
Q  111 tctcacatatccaactgaatgctatgcagtg 141  Q
      ||||| | |||| |||||||| |||||||    
T  29254341 agtcacagacccaattgaatgctgtgcagtg 29254311  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 29224481 - 29224386
Alignment:
Q  15 gacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    ||||||||| ||||||||||||||||||||||   ||||||| ||||| |||||||||||| ||||  |||||| ||| |||| ||| ||||||||    
T  29224481 gacgatccacatttgagccaagctgaattcattagggctttccacatgcggggcccacacgcttatggtagcctttgcgccatggtagatatcccc 29224386  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 29364783 - 29364704
Alignment:
Q  18 gatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccat 97  Q
    |||||| |||||||||||||||||||||| | | ||||| || ||||||||||||||||||||  |||||| ||||||||    
T  29364783 gatccacatttgagccaagctgaattcatttggactttccacttggggggcccacacgtttattgtagcctttgctccat 29364704  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 29213783 - 29213910
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    |||||| ||||||||||||||  ||||||||||||| | | ||||| || || ||| ||||||| |||||  |||| | ||||||||| ||   ||||||    
T  29213783 cagagatgatccatatttgagataagctgaattcatatggactttccacttgtgggacccacacatttatgctagcttttgctccataatactcatcccc 29213882  T
Q  111 tctcacatatccaactgaatgctatgca 138  Q
     |||||||||||||||| ||||| ||||    
T  29213883 actcacatatccaactgcatgctgtgca 29213910  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 497
Target Start/End: Complemental strand, 29254161 - 29254029
Alignment:
Q  365 ttctatgattgcataccagatgtccattttgaattgagtccgttctaaatccgtttgccttttttccaaagctatcaatagatccagctcttgagatgtc 464  Q
    |||| ||||||||||||| ||||||| ||| |   | |||| |||||||||  ||||  ||| |||||||  ||| || ||||  ||||||| |||| ||    
T  29254161 ttctgtgattgcataccacatgtccaatttcagcagcgtcccttctaaatcgatttgattttcttccaaacatattaagagatttagctcttaagatatc 29254062  T
Q  465 ttcttttgttgttcttctaattggaattgttcc 497  Q
    ||||||| |||||||||||||||| ||||||||    
T  29254061 ttctttttttgttcttctaattgggattgttcc 29254029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 512
Target Start/End: Complemental strand, 29285821 - 29285769
Alignment:
Q  460 atgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||||  ||| |||||||||||||||||||||| ||||||||||||||    
T  29285821 atgtcttcttcggttattcttctaattggaattgttccatcaggacatgattc 29285769  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 29311115 - 29311079
Alignment:
Q  476 ttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||||||||||||||||||||||||||||||||    
T  29311115 ttcttctaattggaattgttccttcaggacatgattc 29311079  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 512
Target Start/End: Complemental strand, 29340597 - 29340557
Alignment:
Q  472 gttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  29340597 gttgttcttctaactggaattgttccttcgggacatgattc 29340557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 512
Target Start/End: Complemental strand, 29357436 - 29357401
Alignment:
Q  477 tcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||||||||||||||||||||| ||||||||    
T  29357436 tcttctaattggaattgttccttcagggcatgattc 29357401  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 509
Target Start/End: Complemental strand, 15247196 - 15247150
Alignment:
Q  463 tcttcttttgttgttcttctaattggaattgttccttcaggacatga 509  Q
    ||||||||||||||||||  ||  |||||||||||||||||||||||    
T  15247196 tcttcttttgttgttctttgaacaggaattgttccttcaggacatga 15247150  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 512
Target Start/End: Original strand, 29215061 - 29215097
Alignment:
Q  476 ttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||||| |||||||||||||| |||||||||||    
T  29215061 ttcttctaatcggaattgttccttctggacatgattc 29215097  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 512
Target Start/End: Original strand, 43815075 - 43815139
Alignment:
Q  448 ccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||| | ||||||| || |||||||||||||||||||||||| |||||||||||||||||    
T  43815075 ccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattc 43815139  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 43814554 - 43814619
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgttta 79  Q
    |||||| || ||||||||||||||| ||||||   ||||| ||||| ||||| ||||||||||||||||    
T  43814554 cagagaggacccatatttgagccaaactgaat---tcttgactttccacatgtggggcccacacgttta 43814619  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 512
Target Start/End: Original strand, 30931063 - 30931136
Alignment:
Q  439 tcaatagatccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||| | ||||||| | |||||||||| | ||| |||||||||||||||||||||||| |||||||||||    
T  30931063 tcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttctggacatgattc 30931136  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 30910155 - 30910201
Alignment:
Q  466 tcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||    
T  30910155 tctttttttgttcttctaattggaattgttccttctgaacatgattc 30910201  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 30919578 - 30919649
Alignment:
Q  441 aatagatccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||| | ||||||| | |||||||||| | ||||||||||||||||||  | |||||| |||||||||||    
T  30919578 aatagagctagctcttaatatgtcttcttcttttgttcttctaattggaacagatccttctggacatgattc 30919649  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 30928679 - 30928808
Alignment:
Q  21 ccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatat 120  Q
    ||||||||||| |||||||||||||| ||    ||| ||||| || |||||||  |||||  |||||| |||||||||||||  ||| ||  ||||| |     
T  30928679 ccatatttgagacaagctgaattcattttcatcttctacatgtggagcccacaaatttattgtagcctttgctccatagtatcgatctccagtcacagac 30928778  T
Q  121 ccaactgaatgctatgcagtgtggagcaat 150  Q
    |||  |||||||| |||||||| |||||||    
T  30928779 ccatatgaatgctgtgcagtgtagagcaat 30928808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 14496644 - 14496744
Alignment:
Q  33 caagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatatccaactgaatgc 132  Q
    |||||||||||||| |||| || | ||| | |||||||||||||||||  |||||| |||||||||||||  ||  ||  ||||||||||||||| ||||    
T  14496644 caagctgaattcatattggtttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcacatatccaactgcatgc 14496743  T
Q  133 t 133  Q
    |    
T  14496744 t 14496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 512
Target Start/End: Original strand, 14497577 - 14497629
Alignment:
Q  460 atgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||| || ||||||||||||||| |||||||||||||| |||||||||||    
T  14497577 atgtcttgttctgttgttcttctaatcggaattgttccttctggacatgattc 14497629  T

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