View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040_high_4 (Length: 448)
Name: NF5040_high_4
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 955478 - 955891
Alignment:
| Q |
19 |
gatccgtctcttagaagacaagaccaaaacaacacaacaccacaatggggaacagaacatgaagatgaccaaaatcaaaatccacaagcatggattacac |
118 |
Q |
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| T |
955478 |
gatccgtctcttagaagacaagaccaaaacaacacaacaccacaatggggaacagaacatgaagatgatcaaaatcaaaatccacaagcatggattacac |
955577 |
T |
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| Q |
119 |
taagatttgtacgaccaactcgtccaacaaggcctattgnnnnnnnnnnnnnnnnnnaaaacatggctcctcaactcaatgacattgaaaccccgtcatt |
218 |
Q |
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| T |
955578 |
taagatttgtacgaccaactcgtccaacaaggcctattgcaccaccaccaccac---aaaacatggctcctcaactcaatgacattgaaaccccgtcatt |
955674 |
T |
|
| Q |
219 |
agacgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggttaaggtaaca |
318 |
Q |
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| T |
955675 |
agacgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggttaaggtaaca |
955774 |
T |
|
| Q |
319 |
gaaacacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtggaagtgagagagttaccatgcaaacatttctaccatt |
418 |
Q |
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| T |
955775 |
gaaacacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtgcaagtgagagagttaccatgcaaacatttctaccatt |
955874 |
T |
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| Q |
419 |
ctgactgcattctccct |
435 |
Q |
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| T |
955875 |
ctgactgcattctccct |
955891 |
T |
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