View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040_high_5 (Length: 433)
Name: NF5040_high_5
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 21395632 - 21395226
Alignment:
| Q |
10 |
aagaatataaaggtcatcaaatagggaattttaaatgccactgaagtgtggtaataaatggtgggtccttcccatgcaattactcatacaatttctaact |
109 |
Q |
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| T |
21395632 |
aagaatataaagatcatcaaatagggaactttaaatgctactgaagtgtggtaataaatggtgggtccttcccatgcaattactcatacaatttctaact |
21395533 |
T |
|
| Q |
110 |
ttcttgacggtgccgtttttccatggtgatatttattttgaaaaggaattttcctataaatgtcattaattataattttaatgaaatggatctatcagtc |
209 |
Q |
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| T |
21395532 |
ttcttgacggtgccgtttttccatggtgatatttattttgaaaaggaattttcctataaatgtcattaattataattttaatgaaatggatctatcagtc |
21395433 |
T |
|
| Q |
210 |
atatctgatccttgtatcaaggatgcataaattttggtgtaggctctgcagctcaacaatggaaagacttaatgcatttttagtattagtatgaaattaa |
309 |
Q |
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| T |
21395432 |
atatctgatccttgtatcaaggatgcataaattttggtgtaggctctgcagctcaacaatggaaagacttaatgcatgtttagtactagtatgaaattaa |
21395333 |
T |
|
| Q |
310 |
gtgagataaaatcacaataacaccgtaattttattcttaatactgtgattttgtcaaactcgctttttcatcaaaattaaccaggcaaacacaaaagaag |
409 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
21395332 |
atgagataaaatcacaataccacagtaattttattcttagtactgtgattttgtcaaactcattttttcatcaaaattaacaaggcaaacacaaaagaag |
21395233 |
T |
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| Q |
410 |
cagtggc |
416 |
Q |
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| T |
21395232 |
cagtggc |
21395226 |
T |
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