View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5040_high_8 (Length: 391)
Name: NF5040_high_8
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_high_8 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 4383314 - 4383705
Alignment:
| Q |
10 |
aagaatatcagggcaatgactttacactatgaacccccaaaatagtagaacatgttttctttcctttattcatgtttagatgtcctgtttacaggactct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4383314 |
aagaatatcagggcaatgactttacactatgaacccccaaaatagtagaacatgttttctttcctttattcatgtttagatgtcctgtttacaggactct |
4383413 |
T |
|
| Q |
110 |
cagatacaatgttttgtatgtttatctataaattcagttggcattgaatggttatggtggcattgatttttgatcaaacgatgaacatatctcatatgtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
4383414 |
cagatacaatgttttgtatgtttatctataaattcagttggcattgaatggttatggtggcattggtttttgatcaaccgatgaacatatctcatatgtt |
4383513 |
T |
|
| Q |
210 |
gttttaccaccacttctcagtgatttccgccaagttcttagcttta-----nnnnnnnnnncaaagtatttaatggtcaatctctgaatggtgtgttttt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4383514 |
gttttaccaccacttctcagtgatttccgccaagttcttagctttatttttatttttttttcaaagtatttaatggtcaatctctgaatggtgtgttttt |
4383613 |
T |
|
| Q |
305 |
ggcgataaaat-----gtgccaaataacactttagaatcaaaattggtctcgacatatgcgaccgtttattattgccaggtctcggcatatg |
391 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4383614 |
ggcgataaaatgtgtcgtgccaaataacactttagaatcaaaattggtctcgacatatgcgaccgtttattattgccaggtctcggcatatg |
4383705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University