View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040_high_9 (Length: 362)
Name: NF5040_high_9
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 34317400 - 34317230
Alignment:
| Q |
19 |
ctagttataggcctaacagaaacaaatatcagacgtaatactcataatataaactttcaactttagaaattgagatgttaacagcacaacaaaaatcaag |
118 |
Q |
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| T |
34317400 |
ctagttataggcctaacagaaacaaatatcagacgtaatactcataatataaactttcaactttagaaattgagatgttaacagcacaacaaaaatcaag |
34317301 |
T |
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| Q |
119 |
taatttttcaaactacatggctcggtcgaccccagaaagtgtattaaactcaaaaactaaacctttgcttt |
189 |
Q |
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| T |
34317300 |
taatttttcaaactacatggctcggtcgaccctagaaagtgtattaaactcaaaaactaaacctttgcttt |
34317230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 224 - 351
Target Start/End: Complemental strand, 34317228 - 34317101
Alignment:
| Q |
224 |
ggtctactctcaatactgatgattctgtcggtcttctccatctactctaggatgtagaaccccgattttccctctaatgattatatttctaatctaacat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34317228 |
ggtctactctcaatactgatgattctgtcggtcttctccatttactctaggatgtagaaccccgattttccctctaatgattatatttctaatctaacat |
34317129 |
T |
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| Q |
324 |
ttgtcttacataactactcatgtttcat |
351 |
Q |
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| T |
34317128 |
ttgtcttacataactactcatgtttcat |
34317101 |
T |
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