View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040_low_12 (Length: 314)

Name: NF5040_low_12
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040_low_12
NF5040_low_12
[»] chr4 (5 HSPs)
chr4 (1-300)||(48961224-48961525)
chr4 (36-301)||(48958112-48958377)
chr4 (44-279)||(48912313-48912548)
chr4 (1-297)||(48965262-48965555)
chr4 (26-149)||(48974076-48974199)
[»] scaffold0536 (3 HSPs)
scaffold0536 (44-301)||(6457-6714)
scaffold0536 (44-301)||(10439-10696)
scaffold0536 (9-149)||(1551-1691)
[»] chr8 (1 HSPs)
chr8 (36-301)||(12641427-12641692)
[»] chr2 (3 HSPs)
chr2 (44-301)||(13448339-13448593)
chr2 (1-301)||(13454767-13455064)
chr2 (53-301)||(13440185-13440430)
[»] chr6 (2 HSPs)
chr6 (5-249)||(12590167-12590414)
chr6 (83-288)||(12483423-12483631)
[»] chr7 (1 HSPs)
chr7 (83-301)||(3417476-3417691)
[»] chr5 (2 HSPs)
chr5 (83-298)||(12540700-12540912)
chr5 (179-301)||(28385445-28385564)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 48961224 - 48961525
Alignment:
Q  1 ccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattggg 100  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  48961224 ccattctgttgcaccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattggg 48961323  T
Q  101 atccctgcactaacagcctcaatggtggag--ttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggccca 198  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48961324 atccctgcactaccagcctcaatggtggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggccca 48961423  T
Q  199 ccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48961424 ccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttccct 48961523  T
Q  299 tt 300  Q
    ||    
T  48961524 tt 48961525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 301
Target Start/End: Original strand, 48958112 - 48958377
Alignment:
Q  36 gcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttcca 135  Q
    |||||| ||||||||||||||| |||||||||| |||| |||| || |||||||| |||||||| | ||| || ||||||||||| |  |||||||||||    
T  48958112 gcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttcca 48958211  T
Q  136 cccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgttt 235  Q
    ||||||||| ||||||||  ||||||| ||  |||||| ||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  48958212 cccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgttt 48958311  T
Q  236 ctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 301  Q
    |||||||| |||||||||| |||||||||  ||||||||||||| ||||| ||  |||||||||||    
T  48958312 ctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccctttc 48958377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 44 - 279
Target Start/End: Complemental strand, 48912548 - 48912313
Alignment:
Q  44 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 143  Q
    |||||||||||||| ||||| || | |||| |||| |  |||||||| |||||||| | |||||||||||| |||||||  ||||| |||||||| ||||    
T  48912548 gttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaat 48912449  T
Q  144 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 243  Q
    | ||||||||  ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| |||| | ||||||||||| | ||  ||||||||||    
T  48912448 gtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttc 48912349  T
Q  244 aaatcctttcgccaaccacttgtctttctcctcttc 279  Q
    ||| || || | |||||| || ||||||||||||||    
T  48912348 aaacccctttggcaaccatttttctttctcctcttc 48912313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 48965262 - 48965555
Alignment:
Q  1 ccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattggg 100  Q
    |||||||| |||||||||||| | |||||| ||  |||| || |||||||  || ||||||||||||| |||| |||||   ||||| || ||||| ||     
T  48965262 ccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcgga 48965361  T
Q  101 atccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccacc 200  Q
    | ||| |||| ||||||||| |  ||||||||||| || ||||| ||||||||  ||||||| || | ||||| ||| |||| ||| || || ||||| |    
T  48965362 acccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaac 48965461  T
Q  201 ccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccc 297  Q
    || |||| ||||||||   ||||||| |||||||||||||||| ||||| || |  |||||||| |  ||||||||||| ||||||||| |||||||    
T  48965462 ccctaataatcaaacc---cttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 48965555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 48974076 - 48974199
Alignment:
Q  26 ccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatgg 125  Q
    ||||||||| |||| | |||||||||||||||||||||||||| ||| ||||| || |||||||| |||||||| | |||||||||||| || || | ||    
T  48974076 ccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacgg 48974175  T
Q  126 tggagttccacccgcaatgcgtca 149  Q
    ||||||||||||||||||| ||||    
T  48974176 tggagttccacccgcaatgtgtca 48974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 6714 - 6457
Alignment:
Q  44 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 143  Q
    ||||||||||| || ||||| |||| |||| |||| || |||||||| ||||| || | ||||||||||||||||||||  ||||| |||||||| ||||    
T  6714 gttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 6615  T
Q  144 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 243  Q
    ||||||||||| ||||||  ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||||    
T  6614 gcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttc 6515  T
Q  244 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 301  Q
     ||||| || | |||||| ||  ||||||||||||| ||||||||  |||||||||||    
T  6514 gaatccctttggcaaccattttcctttctcctcttcactctcatcttctttccctttc 6457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 10696 - 10439
Alignment:
Q  44 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 143  Q
    |||||||||||||| ||||| |||| |||| |||| |  |||||||| |||||||| | |||||||||||| ||||| | |||||| |||||||| ||||    
T  10696 gttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaat 10597  T
Q  144 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 243  Q
    | ||||||||| |||||||  | |||||||  || |||||||| || |||||||| |||||||| |||||||||||||||||| ||||   ||| |||||    
T  10596 gtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttc 10497  T
Q  244 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 301  Q
    |||||||||||  | ||| || |||||||||||||  ||||||| | |||||||||||    
T  10496 aaatcctttcggtagccatttttctttctcctcttgactctcattctctttccctttc 10439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 1691 - 1551
Alignment:
Q  9 ctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgc 108  Q
    ||||||| ||||| | |||||| || ||||| | |||||||||| | ||||| |||||||  ||   |||||| ||||| || |||||||| || |||||    
T  1691 ctgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgc 1592  T
Q  109 actaacagcctcaatggtggagttccacccgcaatgcgtca 149  Q
    ||||||||||||  |  | ||||||||||| ||||| ||||    
T  1591 actaacagcctcggttatagagttccacccacaatgtgtca 1551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 301
Target Start/End: Complemental strand, 12641692 - 12641427
Alignment:
Q  36 gcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttcca 135  Q
    ||||| ||||||||| |||||| || ||||| | |||| | || || |||||||| |||||||| |||||||||||||||||||| |    ||||||| |    
T  12641692 gcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcga 12641593  T
Q  136 cccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgttt 235  Q
    ||||||||||||||| ||  ||||||| || | |||||  |  ||||| ||||||||||||||| || ||||||| ||||| ||||| |||||||  |||    
T  12641592 cccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacattt 12641493  T
Q  236 ctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 301  Q
    |||||||| |||||||| | ||||||||| |||||||||||||| ||||||||   ||||||||||    
T  12641492 ctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttc 12641427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 301
Target Start/End: Original strand, 13448339 - 13448593
Alignment:
Q  44 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 143  Q
    |||||||  ||||| ||||||||||  ||| |||| || ||||||||||||||||| |  || |||||||||||||| | ||| ||||||| ||||||||    
T  13448339 gttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaat 13448438  T
Q  144 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 243  Q
    ||||||||||  | ||||| || | ||||| ||  ||| |||| ||||||||||| ||| ||||||||||||||||||||    | || |||||||||||    
T  13448439 gcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcc---cgatatttctctcttc 13448535  T
Q  244 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 301  Q
    |||||| ||||  |||||||| |||||||| ||||||||||||||  |||||||||||    
T  13448536 aaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttc 13448593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 13454767 - 13455064
Alignment:
Q  1 ccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattggg 100  Q
    |||||||| |||||| |||||||||||||| ||  | || |  ||||| |  ||||||||||||||||  ||| |||| || |||||||||||||||||     
T  13454767 ccattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattgga 13454866  T
Q  101 atccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccacc 200  Q
    |  ||    ||||||||||| | | | ||||||| ||||||||||||||||||  | ||||| || | ||| | ||  ||| |||||||||||||||| |    
T  13454867 actcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaac 13454966  T
Q  201 ccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttcccttt 300  Q
    || |||||||||||||||| ||||   | |||||| ||||||||||||| |||| ||||||||| | |||||||||||||||||||||  ||||||||||    
T  13454967 ccctaatgatcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttcccttt 13455063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 53 - 301
Target Start/End: Original strand, 13440185 - 13440430
Alignment:
Q  53 ttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataa 152  Q
    ||||||||||||||||  ||| |||| || ||||||||||||||||| |  || |||||||||| ||| |   | ||||||| |||||||||||||||||    
T  13440185 ttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataa 13440284  T
Q  153 acacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatccttt 252  Q
    |  | |||||||| | ||||| ||  ||| |||||||||||||||| |||||||||||||||||| || || |   ||||||||||||||| ||||| ||    
T  13440285 atccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcct---aatgtttctctcttcgaatccctt 13440381  T
Q  253 cgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 301  Q
     | ||||||||| |||||||| || || ||||||||  |||||||||||    
T  13440382 tggcaaccacttttctttctcttcctcactctcatcttctttccctttc 13440430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 12590414 - 12590167
Alignment:
Q  5 tctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatcc 104  Q
    |||| |||||||||||| | |||||| || ||||||||||||||||||||||| ||||| || | |||  |||  |  ||||| || ||||| || || |    
T  12590414 tctgttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattc 12590315  T
Q  105 ctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccacccctt 204  Q
    | |||||||| ||||| | |  ||| ||||| || ||||| ||||||||| | ||||| ||  |||||| ||  ||||| |||||||||||||| ||| |    
T  12590314 cagcactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccct 12590215  T
Q  205 aatgatcaaacccttcttcttt---tcaatgtttctctcttcaaatcc 249  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||    
T  12590214 aatgatcaaacccttcttctttctcccaatgtttctctcttcaaatcc 12590167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 12483631 - 12483423
Alignment:
Q  83 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 182  Q
    |||||||| |||||||| |||||||||||||| || || |     || ||||| || || || ||||||||  ||||||| || | ||||| ||  ||||    
T  12483631 ggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatca 12483532  T
Q  183 taacttgtggggcccaccccttaatgatcaaacccttcttctt--ttc-aatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttc 279  Q
      || ||||| ||||||||| | ||||| |||||| |||| ||  ||| |||||||||||| |||||||| |||| ||||||||| ||||||||||| ||    
T  12483531 gtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatc 12483432  T
Q  280 gctctcatc 288  Q
    |||||||||    
T  12483431 gctctcatc 12483423  T

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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 301
Target Start/End: Complemental strand, 3417691 - 3417476
Alignment:
Q  83 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 182  Q
    ||||||||||||||||| |  ||||||| |||||||||||     ||||||| ||| ||||| ||||||||  | || ||||| | ||||| ||  |||     
T  3417691 ggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatct 3417592  T
Q  183 taacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgct 282  Q
     ||| ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||||| |||||||| |||||| |    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgtt 3417495  T
Q  283 ctcatccactttccctttc 301  Q
    ||||||  |||| ||||||    
T  3417494 ctcatcttcttttcctttc 3417476  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 298
Target Start/End: Original strand, 12540700 - 12540912
Alignment:
Q  83 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 182  Q
    ||||||||||||||||| |  || |||| ||||||||| |   | ||||| | ||| ||||| ||||||||  | |||||||| | ||||| ||  |||     
T  12540700 ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct 12540799  T
Q  183 taacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgct 282  Q
    |||| ||||||||||| ||| |||||||||||||||| ||   | ||||||||||||| |||||||| |||| || |||||| |||||||| |||||  |    
T  12540800 taacctgtggggcccaacccctaatgatcaaacccttttt---tccaatgtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagt 12540896  T
Q  283 ctcatccactttccct 298  Q
    ||||||  ||||||||    
T  12540897 ctcatcttctttccct 12540912  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 301
Target Start/End: Original strand, 28385445 - 28385564
Alignment:
Q  179 atcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctctt 278  Q
    |||| ||||||||||||||| ||| | || || |||||||||||   | ||||||||||||| |||||||| || | || |||||| |||||||| ||||    
T  28385445 atcagaacttgtggggcccaacccctgattatgaaacccttctt---tccaatgtttctctcctcaaatccctttggcagccacttttctttctcttctt 28385541  T
Q  279 cgctctcatccactttccctttc 301  Q
    || |||||||  |||||||||||    
T  28385542 cgatctcatcttctttccctttc 28385564  T

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