View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040_low_13 (Length: 301)
Name: NF5040_low_13
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 45745792 - 45745516
Alignment:
| Q |
20 |
ctacatacctgaagcttcaaaggccttgcaaatttatgcacacagcctttgtcatctttcaccacatcaaatggtccatctttatcaaagcagaatacta |
119 |
Q |
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| T |
45745792 |
ctacatacctgaagcttcaaaggccttgcaaatttatgcacacagcctttgtcatctttcaccacatcaaatggtccatctttatcaaagcagaatacta |
45745693 |
T |
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| Q |
120 |
tataatcgtcatccggaaaaaatgacctacttgattcatcaaacttgttcacagttggaacaccatttttgtcatcgaccatcgatttttcgtttagttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745692 |
tataatcgtcatccggaaaaaatgacctacttgattcatcaaacttgttcacagttggaacaccatttttgtcatcgaccatcgatttttcgtttagttg |
45745593 |
T |
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| Q |
220 |
tctcttattgcattttgtgcttttctgtgaggaatgttttttgtggaaactactattaaagctttcttcttctctct |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45745592 |
tctcttattgcattttgtgcttttctgtgaggaatgttttttgtggaaactactattaaagctttcttcttttctct |
45745516 |
T |
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