View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040_low_15 (Length: 267)
Name: NF5040_low_15
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 33556926 - 33557158
Alignment:
| Q |
14 |
caaaggggaaggcgaggttgattacatgaatcaaacgacacgattatatttttctatcaaaatcatgaggaagtcnnnnnnnaacaataaataaataaat |
113 |
Q |
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| T |
33556926 |
caaaggcgaaggcgaggttgattacatgaatcaaac---acgattatatttttctatcaaaatcatgaggaagtctttttttaacaaaaaataaataaat |
33557022 |
T |
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| Q |
114 |
agaagacaaaattaataatgaattggccgcaattgttaaagaaatccattttagataagagattatatgtcaatttatttataaatgaaggccatctttg |
213 |
Q |
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| T |
33557023 |
agaagacaaaattaataatgaattggccgcaattgttaaagaaatccattttagataagagattatatgtcaatttatttataaatgaaggccatcctta |
33557122 |
T |
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| Q |
214 |
cctcacaaattaattttgtggagttgtgtaagattt |
249 |
Q |
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| T |
33557123 |
cctcacaaattaactttgtggagttgtgtaagattt |
33557158 |
T |
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