View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5040_low_17 (Length: 250)
Name: NF5040_low_17
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_low_17 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 26505301 - 26505538
Alignment:
| Q |
13 |
aatatcagcaccacaagttgtgtctctgcacctcaagttacacaaaagcttcactgtacatggaagaaaattcagccatgcataagactttggcttggca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26505301 |
aatatcagcaccacaagttgtgtctctgcacctcaagttacacaaaagcttcactgtacatggaagaaaattcagccatgcataagactttggcttggca |
26505400 |
T |
|
| Q |
113 |
attcagccatacgtggtggtgggtcctacaagtatagtatagtggtatagagacgctggcaggggacgtaagatcgtatatatcgtacgaatttgttaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26505401 |
attcagccatacgtggtggtgggtcctacaagtatagtatagtggtacagagacgctggcagaggacgtaagatcgtatatatcgtacgaatttgttaaa |
26505500 |
T |
|
| Q |
213 |
cctaagtttgttgcctcacgccaaaggaacaacacatc |
250 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
26505501 |
cctaagtttgttgcctcacgcaaaagtaacaacacatc |
26505538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University