View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040_low_19 (Length: 249)

Name: NF5040_low_19
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040_low_19
NF5040_low_19
[»] chr7 (9 HSPs)
chr7 (10-127)||(21395733-21395850)
chr7 (155-249)||(37129803-37129897)
chr7 (131-246)||(42890231-42890345)
chr7 (154-249)||(1360557-1360651)
chr7 (155-249)||(10031913-10032006)
chr7 (160-229)||(9533516-9533584)
chr7 (192-249)||(44719424-44719481)
chr7 (160-217)||(47683951-47684008)
chr7 (177-246)||(40065797-40065865)
[»] chr1 (8 HSPs)
chr1 (131-249)||(36321593-36321710)
chr1 (129-249)||(26322581-26322701)
chr1 (189-249)||(36621954-36622014)
chr1 (156-248)||(4521001-4521092)
chr1 (181-249)||(40570711-40570779)
chr1 (155-236)||(15549641-15549721)
chr1 (152-249)||(50670384-50670481)
chr1 (212-249)||(9221271-9221308)
[»] chr8 (9 HSPs)
chr8 (156-249)||(36924056-36924149)
chr8 (154-249)||(7513286-7513380)
chr8 (154-249)||(22209427-22209521)
chr8 (175-249)||(40949379-40949452)
chr8 (199-249)||(7528262-7528312)
chr8 (175-249)||(39333511-39333584)
chr8 (157-249)||(2445118-2445209)
chr8 (186-249)||(39093106-39093169)
chr8 (212-249)||(12782798-12782835)
[»] chr2 (10 HSPs)
chr2 (129-247)||(10824660-10824778)
chr2 (130-249)||(16717630-16717747)
chr2 (155-249)||(27133097-27133190)
chr2 (168-249)||(2825961-2826041)
chr2 (155-236)||(14102291-14102371)
chr2 (154-249)||(13811060-13811154)
chr2 (155-210)||(38786267-38786322)
chr2 (168-249)||(35477693-35477774)
chr2 (154-249)||(2888929-2889023)
chr2 (158-210)||(45303578-45303629)
[»] chr5 (5 HSPs)
chr5 (159-249)||(27833286-27833375)
chr5 (170-249)||(34032097-34032175)
chr5 (189-249)||(17098211-17098271)
chr5 (170-249)||(2816199-2816278)
chr5 (186-247)||(11844267-11844327)
[»] chr3 (6 HSPs)
chr3 (156-249)||(24658429-24658521)
chr3 (131-249)||(52309189-52309306)
chr3 (154-249)||(46711905-46711999)
chr3 (164-249)||(40546348-40546433)
chr3 (155-249)||(48322198-48322291)
chr3 (124-204)||(30082925-30083004)
[»] chr6 (2 HSPs)
chr6 (161-249)||(3605013-3605101)
chr6 (158-249)||(30509337-30509427)
[»] chr4 (5 HSPs)
chr4 (155-249)||(32055332-32055426)
chr4 (129-249)||(37179712-37179831)
chr4 (130-224)||(38944985-38945079)
chr4 (128-249)||(39827113-39827233)
chr4 (161-249)||(24324226-24324313)
[»] scaffold0009 (1 HSPs)
scaffold0009 (156-249)||(189090-189182)
[»] scaffold0192 (1 HSPs)
scaffold0192 (154-249)||(15886-15980)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 21395850 - 21395733
Alignment:
Q  10 tattctgcattcaatatttaaatgatcccatatgcaaagaacatggcgattgattcattaagcaccatggaaggaaacttcagaacgtgaagaattaatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21395850 tattctgcattcaatatttaaatgatcccatatgcaaagaacatggcgattgattcattaagcaccatggaaggaaacttcagaacgtgaagaattaatt 21395751  T
Q  110 gaagcatgattatattta 127  Q
    ||||||||||| ||||||    
T  21395750 gaagcatgattgtattta 21395733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 37129803 - 37129897
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||  || |||| ||||||||||||||| |||||| ||||||| ||||| ||| |||| |||||||||||||||| ||||||||||||    
T  37129803 cactctttaagaaccataagtagtaagtatattatgaaaatgtatgtaattaatgtcttgtaaattgaaatatttaacttttttaaagaataatt 37129897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 42890231 - 42890345
Alignment:
Q  131 aaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatattta 230  Q
    ||||||| |||||||| |  || ||||||||||| |||||||| ||| |||||| || ||||||| |||||||| ||||| |||||||||||||| |||     
T  42890231 aaatgttaacgagtgttcctgggacactctttaatgactataagtagcaagtatttt-taaaaatacatgtaatcaatgtattggaaatcgaaatgtttg 42890329  T
Q  231 acttttgtaaagaata 246  Q
    |||||| |||| ||||    
T  42890330 acttttttaaaaaata 42890345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 1360651 - 1360557
Alignment:
Q  154 acactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||| |||||||| ||||| |||| ||||||||| |  |||||| ||||  ||||||||||||| ||||||||||| |||| |||||||    
T  1360651 acactctttaaggactataagtagtatgtat-ttataaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataatt 1360557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 10031913 - 10032006
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||| |||||||||||||| |||| |||| |||| |  |||||| ||||  ||||||||||||| |||||||||||  ||| |||||||    
T  10031913 cactctttaaggactataaatagtatgtat-ttatgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataatt 10032006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 9533516 - 9533584
Alignment:
Q  160 tttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatattt 229  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||| ||||  ||| ||||| ||||||||    
T  9533516 tttaaagactataaataataagtat-ttataaaaatgcgtgtaatcaatgcattgaaaatcaaaatattt 9533584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 44719424 - 44719481
Alignment:
Q  192 aaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||||| |||||||| ||||||||||| ||| |||||| |||| |||||||    
T  44719424 aaatgcatgtaatcaatgttttagaaatcgaaatgtttgacttttttaaaaaataatt 44719481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 47683951 - 47684008
Alignment:
Q  160 tttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaa 217  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||| ||||| ||||||    
T  47683951 tttaaggaccataaataataagtatattatgaaaatgcatgtaattaatgtcttggaa 47684008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 40065797 - 40065865
Alignment:
Q  177 gtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaata 246  Q
    |||||||| |||||||||| |||||| |  |||| ||| ||||| ||||||||||||||| |||||||||    
T  40065797 gtaagtat-ttataaaaatacatgtattcgatgtattgaaaatcaaaatatttaacttttttaaagaata 40065865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 36321593 - 36321710
Alignment:
Q  131 aaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatattta 230  Q
    ||||||| ||||||||||  ||  |||||||||| |||||||||||| |||||| |||||||||| |||||||| ||||  |||||||||||||| ||||    
T  36321593 aaatgttaacgagtgtccttggggcactctttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatgcattggaaatcgaaatgttta 36321691  T
Q  231 acttttgtaaagaataatt 249  Q
    |||||| ||||||||||||    
T  36321692 acttttctaaagaataatt 36321710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 26322581 - 26322701
Alignment:
Q  129 gaaaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatt 228  Q
    ||||||||| |||||||||   ||| | |||||||| ||  |||| ||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||    
T  26322581 gaaaatgttaacgagtgtcttcggagctctctttaaggatcataattagtaagtatattatgaaaatgcatgtaatcaatgtcttggaaatcgaaatgtt 26322680  T
Q  229 taacttttgtaaagaataatt 249  Q
    | | |||| | ||||||||||    
T  26322681 tgattttttttaagaataatt 26322701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 36622014 - 36621954
Alignment:
Q  189 taaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||    
T  36622014 taaaaatgcatgtaatcattgttttggaaatcaaaatatttaacttttttaaagaataatt 36621954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 4521001 - 4521092
Alignment:
Q  156 actctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataat 248  Q
    ||||||||| |||||||  ||| |||||| |||||||||| |||||||| ||||  |||||||| ||||| |||||||||| |||||||||||    
T  4521001 actctttaaggactatatgtagaaagtat-ttataaaaatacatgtaatcaatgcattggaaattgaaatgtttaacttttttaaagaataat 4521092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 40570779 - 40570711
Alignment:
Q  181 gtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||| |||||||||||||| ||||| | |||||||||||| ||| |||||| ||||||||||||    
T  40570779 gtatattatgaaaatgcatgtaatcaatgtctaggaaatcgaaatgtttgacttttttaaagaataatt 40570711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 15549721 - 15549641
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaactttt 236  Q
    ||||||||||||||||||| ||| |||||| |||||||||||  |||||| ||||  ||| |||||||||||||| ||||||    
T  15549721 cactctttaaagactataagtagcaagtat-ttataaaaatgtgtgtaatcaatgcattgaaaatcgaaatattttactttt 15549641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 50670384 - 50670481
Alignment:
Q  152 gaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatattt-aacttttgtaaagaataatt 249  Q
    |||||||||| || || |||||||||||||||| |||| ||||||||||||||| |||  ||||||| | |||||||| |  |||| ||||||||||||    
T  50670384 gaacactcttcaaggattataaatagtaagtat-ttatgaaaatgcatgtaatagatgcattggaaaacaaaatatttgattttttttaaagaataatt 50670481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 9221271 - 9221308
Alignment:
Q  212 ttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9221271 ttggaaatcgaaatatttaacttttctaaagaataatt 9221308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 36924149 - 36924056
Alignment:
Q  156 actctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||  || |||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  36924149 actctttaagaaccataagtagtaagaatattatgaaaatgcatgtaattaatgttttggaaatcgaaatatttgacttttttaaagaataatt 36924056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 7513286 - 7513380
Alignment:
Q  154 acactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||| ||||| |||||||||||| |||||| |||||||||| |||||||| ||||  ||| |||||||||| ||||| |||| ||||||||||||    
T  7513286 acactttttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttaatttttctaaagaataatt 7513380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 22209521 - 22209427
Alignment:
Q  154 acactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||| |||||| || ||||||||||||||| |||| |||||  ||||||| ||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  22209521 acactatttaaaaaccataaatagtaagtat-ttatgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataatt 22209427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 40949452 - 40949379
Alignment:
Q  175 tagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||| ||||||||||||||||||| ||| | |||||||||||||||||  |||||| | ||||||||||    
T  40949452 tagtaagtat-ttataaaaatgcatgtaattaatatattggaaatcgaaatattagacttttatgaagaataatt 40949379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 7528262 - 7528312
Alignment:
Q  199 tgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||| ||||| |||||||||||||||||| ||||| |||||||||||||    
T  7528262 tgtaatcaatgtattggaaatcgaaatatttgactttcgtaaagaataatt 7528312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 39333511 - 39333584
Alignment:
Q  175 tagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||||| | |||||||||||||| ||||| || ||||||||||| ||| |||||| | ||||||||||    
T  39333511 tagtaagtatattttgaaaatgcatgtaatcaatgtctt-gaaatcgaaatgtttgacttttttgaagaataatt 39333584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 2445118 - 2445209
Alignment:
Q  157 ctctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||| || ||||| |||||||||| |||||||||| |||||||  | ||  ||| |||||||||||||||||||||  ||| |||||||    
T  2445118 ctctttaaggattataagtagtaagtat-ttataaaaatacatgtaacgattgccttgaaaatcgaaatatttaacttttaaaaaaaataatt 2445209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 39093169 - 39093106
Alignment:
Q  186 ttataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||||| |||||| ||||  |||||| ||||||||||  |||||| ||||||||||||    
T  39093169 ttataaaaatgcgtgtaatcaatgcattggaactcgaaatattatacttttttaaagaataatt 39093106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 12782835 - 12782798
Alignment:
Q  212 ttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  12782835 ttggaaatcgaaatattcaacttttttaaagaataatt 12782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 10824778 - 10824660
Alignment:
Q  129 gaaaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatt 228  Q
    ||||||||| |||||||||||  ||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| ||| | ||||||||  |||| ||    
T  10824778 gaaaatgttaacgagtgtccaccgaacactctttaaagaccataattagtaagtatattatgaaaatacatgtaatcaatatcttggaaattaaaatgtt 10824679  T
Q  229 taacttttgtaaagaataa 247  Q
    | ||||||  |||||||||    
T  10824678 tgactttttaaaagaataa 10824660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 16717747 - 16717630
Alignment:
Q  130 aaaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatattt 229  Q
    |||||||| ||||||||||  ||| |||||||||| ||  |||| |||||||||| |||| ||||||||| |||| |||| |||||||||| ||||||||    
T  16717747 aaaatgttaacgagtgtccccgga-cactctttaaggaacataagtagtaagtat-ttatgaaaatgcatataatcaatgctttggaaatcaaaatattt 16717650  T
Q  230 aacttttgtaaagaataatt 249  Q
    || |||| ||||||||||||    
T  16717649 aatttttttaaagaataatt 16717630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 27133190 - 27133097
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||||||||||| |||||||| | || ||||||||||| |||| ||||  |||||||||||| | | | |||||| ||||||||||||    
T  27133190 cactctttaaagactataagtagtaagtgtttt-taaaaatgcatataatcaatgcattggaaatcgaattgtatgacttttttaaagaataatt 27133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 2825961 - 2826041
Alignment:
Q  168 ctataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||| |||||||||| |||||||||||  |||||| ||||  |||||||||||||||||| |||||| |||| |||||||    
T  2825961 ctataagtagtaagtat-ttataaaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatt 2826041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 14102291 - 14102371
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaactttt 236  Q
    |||||||||| |||||||| |||||| ||| |||| |||| |  |||||| ||||| |||||||||||||||||||||||||    
T  14102291 cactctttaaggactataagtagtaactat-ttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaactttt 14102371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 13811154 - 13811060
Alignment:
Q  154 acactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||| | |||||||||| |||||| |||||||||| | ||| || ||||  ||||||||  |||||||| |||||| ||||||||||||    
T  13811154 acactctttaagggctataaatagaaagtat-ttataaaaatacgtgtgatcaatgcattggaaattaaaatattttacttttttaaagaataatt 13811060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 38786322 - 38786267
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgt 210  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||| |||| |||||    
T  38786322 cactctttaaggactataattagtaagtatattatgaaaatgcatctaatcaatgt 38786267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 35477693 - 35477774
Alignment:
Q  168 ctataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaac-ttttgtaaagaataatt 249  Q
    |||||| |||||||||| || ||||||||||||| || | ||| |||||||||||||||||| || |||| ||||||||||||    
T  35477693 ctataagtagtaagtatttt-taaaaatgcatgtcatcattgtcttggaaatcgaaatatttgactttttttaaagaataatt 35477774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 2889023 - 2888929
Alignment:
Q  154 acactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||| |||||||| ||||| |||| |||| |||| |  |||| | |||   ||||||||||||||||||||||||| |||| |||||||    
T  2889023 acactctttaaggactataagtagtatgtat-ttatgaaaaagtgtgtagtcaatacattggaaatcgaaatatttaacttttttaaaaaataatt 2888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 45303629 - 45303578
Alignment:
Q  158 tctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgt 210  Q
    ||||||| ||| ||||||||||||||| |||| |||||||||||||| |||||    
T  45303629 tctttaaggaccataaatagtaagtat-ttatgaaaatgcatgtaatcaatgt 45303578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 27833286 - 27833375
Alignment:
Q  159 ctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||| ||| | ||||||||||||| |||| |||||||||||||| ||||  ||| |||||||||||||| |||||||||||||||||||    
T  27833286 ctttaaggaccacaaatagtaagtat-ttatgaaaatgcatgtaatcaatgcattgtaaatcgaaatatttgacttttgtaaagaataatt 27833375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 34032097 - 34032175
Alignment:
Q  170 ataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||| |||||||||| || |||||||||||||||| | ||  || ||||| |||||||||||||||| ||||||||||||    
T  34032097 ataagtagtaagtatttt-taaaaatgcatgtaatcattgcctttgaaattgaaatatttaacttttttaaagaataatt 34032175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 17098211 - 17098271
Alignment:
Q  189 taaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||| ||||||| | ||| |||||||||||||||||| |||||| |||| |||||||    
T  17098211 taaaaatgaatgtaatcattgtcttggaaatcgaaatatttgacttttttaaataataatt 17098271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 2816278 - 2816199
Alignment:
Q  170 ataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||||| ||| | | ||||||||||||||| | ||| ||| |||| ||||||||| | |||| ||||||||||||    
T  2816278 ataaatagtaaatatttcaaaaaaatgcatgtaatcattgtcttgaaaattgaaatatttgatttttttaaagaataatt 2816199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 11844327 - 11844267
Alignment:
Q  186 ttataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataa 247  Q
    |||| ||||||||| |||| ||||| ||||||||  ||||||||||||||| ||||||||||    
T  11844327 ttatgaaaatgcatataatcaatgtattggaaattaaaatatttaactttt-taaagaataa 11844267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 24658429 - 24658521
Alignment:
Q  156 actctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||  || ||||||||| |||||||||| ||| |||||||||| ||| | || |||||||||||||||||||||| ||||||||||||    
T  24658429 actctttaagaaccataaatagttagtatattatgaaa-tgcatgtaattaatatcttagaaatcgaaatatttaacttttttaaagaataatt 24658521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 52309306 - 52309189
Alignment:
Q  131 aaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatattta 230  Q
    ||||||| ||||||||||  ||  |||||||||| | |||||| ||| |||||| |||||||||| | |||||| ||||  ||||||||||||||||||     
T  52309306 aaatgttaacgagtgtccccggggcactctttaagggctataagtagcaagtat-ttataaaaatacgtgtaatcaatgcattggaaatcgaaatatttt 52309208  T
Q  231 acttttgtaaagaataatt 249  Q
    || ||| ||||||||||||    
T  52309207 acctttttaaagaataatt 52309189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 46711905 - 46711999
Alignment:
Q  154 acactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||| ||||| ||| |||||||  |||||| ||||||||||||||||||| ||||  ||||||||| |||| ||| |||||| ||||||||||||    
T  46711905 acactttttaaggaccataaataacaagtat-ttataaaaatgcatgtaatcaatgcattggaaatcaaaatgtttgacttttttaaagaataatt 46711999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 40546433 - 40546348
Alignment:
Q  164 aagactataaatagtaagtatattat-aaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||| |||| |||||||||| |||| ||||||||||||||| ||||  |||||||||||||||||| |||||| |||| |||||||    
T  40546433 aagaccataagtagtaagtat-ttatgaaaaatgcatgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 48322198 - 48322291
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||| ||| |||| ||||| |||| |||| ||||  |||||||| ||||| ||||||||||||| |||| ||||||  ||| |||||||    
T  48322198 cactctttaaggaccataagtagtaggtat-ttatgaaaaaacatgtaatcaatgtattggaaatcgaaacatttgactttttaaaaaaataatt 48322291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 30083004 - 30082925
Alignment:
Q  124 tttaagaaaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaat 204  Q
    |||||| ||||||| |||||||||   || |||||||||||   ||||||||||||||||| || ||||||| ||||||||    
T  30083004 tttaaggaaatgttaacgagtgtcttcgggacactctttaagacctataaatagtaagtat-ttttaaaaatccatgtaat 30082925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 3605013 - 3605101
Alignment:
Q  161 ttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||| ||| |||| |||||| |||||||| |||||||||| ||| |||||||||||||||||||||||| |||||  || |||||||||    
T  3605013 ttaaggaccataattagtaaatatattatgaaaatgcatgcaattaatgttttggaaatcgaaatatttgactttcttagagaataatt 3605101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 30509427 - 30509337
Alignment:
Q  158 tctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||| |||||||||||| |||||| |||||||||| |||||||| ||||  ||| |||||||||| ||| | |||| ||||||||||||    
T  30509427 tctttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataatt 30509337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 32055332 - 32055426
Alignment:
Q  155 cactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcg-aaatatttaacttttgtaaagaataatt 249  Q
    |||||||||| |||||||||||| |||||| |||||||||| |||||||| ||||  |||||||||| |||| ||| |||||| ||||||||||||    
T  32055332 cactctttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatgcattggaaatcgaaaatgtttgacttttctaaagaataatt 32055426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 37179831 - 37179712
Alignment:
Q  129 gaaaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatt 228  Q
    ||||||||| ||||||||||  |  ||| | ||||| |||||||||||| |||||| |||||||||| ||| |||| |||   |||||||||||||| ||    
T  37179831 gaaaatgttaacgagtgtccccgagacattttttaaggactataaatagcaagtat-ttataaaaatacatataatcaatacattggaaatcgaaatgtt 37179733  T
Q  229 taacttttgtaaagaataatt 249  Q
    | |||||| |||| |||||||    
T  37179732 tgacttttctaaaaaataatt 37179712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 38944985 - 38945079
Alignment:
Q  130 aaaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaa 224  Q
    |||||||| |||||||||   ||  ||||||||||  || |||| |||||| |||||||| |||||||| ||||| ||||| |||||||||||||    
T  38944985 aaaatgttaacgagtgtcattggggcactctttaagaaccataattagtaaatatattatgaaaatgcaagtaatcaatgtcttggaaatcgaaa 38945079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 39827113 - 39827233
Alignment:
Q  128 agaaaatgtttacgagtgtccaaggaacactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatat 227  Q
    |||||||||| |||||||||   || | || |||||| ||||||||||||||||||| |||||||| | || ||||| ||||  ||| |||| ||||| |    
T  39827113 agaaaatgttaacgagtgtcttcgggatacgctttaaggactataaatagtaagtat-ttataaaattacaagtaatcaatgaattgaaaattgaaattt 39827211  T
Q  228 ttaacttttgtaaagaataatt 249  Q
    || || ||| ||||||||||||    
T  39827212 ttgacatttttaaagaataatt 39827233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 24324226 - 24324313
Alignment:
Q  161 ttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||  |||  ||| ||||  |||||||| | |||| || |||||||||    
T  24324226 ttaaagactataaagagtaagtat-ttataaaaatgtatgtaatctatgcattgaaaattaaaatattttatttttttagagaataatt 24324313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 189182 - 189090
Alignment:
Q  156 actctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||||| ||| ||||||| ||||||| |||| |||||   |||||| ||||| || ||||| |||||||||||||||| ||||||||||||    
T  189182 actctttaatgaccataaataataagtat-ttatgaaaatatgtgtaattaatgtattagaaatagaaatatttaacttttttaaagaataatt 189090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 15886 - 15980
Alignment:
Q  154 acactctttaaagactataaatagtaagtatattataaaaatgcatgtaataaatgttttggaaatcgaaatatttaacttttgtaaagaataatt 249  Q
    ||||||| ||||||| ||||||| ||| ||||||  ||||||  ||| ||| ||||||||| ||||||||||||||||| ||| | ||||||||||    
T  15886 acactctataaagaccataaataataaatatatttaaaaaatt-atgcaatcaatgttttgaaaatcgaaatatttaacatttttcaagaataatt 15980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University