View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040_low_2 (Length: 530)

Name: NF5040_low_2
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040_low_2
NF5040_low_2
[»] chr8 (13 HSPs)
chr8 (11-232)||(29245988-29246205)
chr8 (342-512)||(29245703-29245873)
chr8 (11-141)||(29254311-29254441)
chr8 (15-110)||(29224386-29224481)
chr8 (18-97)||(29364704-29364783)
chr8 (11-138)||(29213783-29213910)
chr8 (365-497)||(29254029-29254161)
chr8 (460-512)||(29285769-29285821)
chr8 (476-512)||(29311079-29311115)
chr8 (472-512)||(29340557-29340597)
chr8 (477-512)||(29357401-29357436)
chr8 (463-509)||(15247150-15247196)
chr8 (476-512)||(29215061-29215097)
[»] chr3 (2 HSPs)
chr3 (448-512)||(43815075-43815139)
chr3 (11-79)||(43814554-43814619)
[»] chr2 (4 HSPs)
chr2 (439-512)||(30931063-30931136)
chr2 (466-512)||(30910155-30910201)
chr2 (441-512)||(30919578-30919649)
chr2 (21-150)||(30928679-30928808)
[»] chr5 (2 HSPs)
chr5 (33-133)||(14496644-14496744)
chr5 (460-512)||(14497577-14497629)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 4e-95; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 29246205 - 29245988
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29246205 cagagacgatccatatttgacccaagctgaattcatttgggctttcaacatggggggcccacacgtttattatagcctgtgctccatagtatatatcccc 29246106  T
Q  111 tctcacatatccaactgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaacatacttttttgt 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  29246105 tctcacaaatccaactgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaccatacatttttgt 29246006  T
Q  211 acagttaatgcgtaaggagact 232  Q
    ||    ||||||||||||||||    
T  29246005 ac----aatgcgtaaggagact 29245988  T

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Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 342 - 512
Target Start/End: Complemental strand, 29245873 - 29245703
Alignment:
Q  342 tttgagagacaaaatatataagtttctatgattgcataccagatgtccattttgaattgagtccgttctaaatccgtttgccttttttccaaagctatca 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  29245873 tttgagagacaaaatatataagtttctatgattgcataccagatgtccattttgaattgtgtccgttctaaatccgtttgcctttcttccaaaactatca 29245774  T
Q  442 atagatccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29245773 atagatccagctcttgagatgtcttcttctgttgttcttctaattggaattgttccttcaggacatgattc 29245703  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 29254441 - 29254311
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    ||||||||||||| ||||| |||||||| ||||||||| || |||||||||||||||||||||| |||||  ||||||||||||||| |||| |||| ||    
T  29254441 cagagacgatccacatttgtgccaagcttaattcatctaggttttcaacatggggggcccacacatttatggtagcctgtgctccatggtatctatctcc 29254342  T
Q  111 tctcacatatccaactgaatgctatgcagtg 141  Q
      ||||| | |||| |||||||| |||||||    
T  29254341 agtcacagacccaattgaatgctgtgcagtg 29254311  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 29224481 - 29224386
Alignment:
Q  15 gacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    ||||||||| ||||||||||||||||||||||   ||||||| ||||| |||||||||||| ||||  |||||| ||| |||| ||| ||||||||    
T  29224481 gacgatccacatttgagccaagctgaattcattagggctttccacatgcggggcccacacgcttatggtagcctttgcgccatggtagatatcccc 29224386  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 29364783 - 29364704
Alignment:
Q  18 gatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccat 97  Q
    |||||| |||||||||||||||||||||| | | ||||| || ||||||||||||||||||||  |||||| ||||||||    
T  29364783 gatccacatttgagccaagctgaattcatttggactttccacttggggggcccacacgtttattgtagcctttgctccat 29364704  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 29213783 - 29213910
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc 110  Q
    |||||| ||||||||||||||  ||||||||||||| | | ||||| || || ||| ||||||| |||||  |||| | ||||||||| ||   ||||||    
T  29213783 cagagatgatccatatttgagataagctgaattcatatggactttccacttgtgggacccacacatttatgctagcttttgctccataatactcatcccc 29213882  T
Q  111 tctcacatatccaactgaatgctatgca 138  Q
     |||||||||||||||| ||||| ||||    
T  29213883 actcacatatccaactgcatgctgtgca 29213910  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 497
Target Start/End: Complemental strand, 29254161 - 29254029
Alignment:
Q  365 ttctatgattgcataccagatgtccattttgaattgagtccgttctaaatccgtttgccttttttccaaagctatcaatagatccagctcttgagatgtc 464  Q
    |||| ||||||||||||| ||||||| ||| |   | |||| |||||||||  ||||  ||| |||||||  ||| || ||||  ||||||| |||| ||    
T  29254161 ttctgtgattgcataccacatgtccaatttcagcagcgtcccttctaaatcgatttgattttcttccaaacatattaagagatttagctcttaagatatc 29254062  T
Q  465 ttcttttgttgttcttctaattggaattgttcc 497  Q
    ||||||| |||||||||||||||| ||||||||    
T  29254061 ttctttttttgttcttctaattgggattgttcc 29254029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 512
Target Start/End: Complemental strand, 29285821 - 29285769
Alignment:
Q  460 atgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||||  ||| |||||||||||||||||||||| ||||||||||||||    
T  29285821 atgtcttcttcggttattcttctaattggaattgttccatcaggacatgattc 29285769  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 29311115 - 29311079
Alignment:
Q  476 ttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||||||||||||||||||||||||||||||||    
T  29311115 ttcttctaattggaattgttccttcaggacatgattc 29311079  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 512
Target Start/End: Complemental strand, 29340597 - 29340557
Alignment:
Q  472 gttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  29340597 gttgttcttctaactggaattgttccttcgggacatgattc 29340557  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 512
Target Start/End: Complemental strand, 29357436 - 29357401
Alignment:
Q  477 tcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||||||||||||||||||||| ||||||||    
T  29357436 tcttctaattggaattgttccttcagggcatgattc 29357401  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 509
Target Start/End: Complemental strand, 15247196 - 15247150
Alignment:
Q  463 tcttcttttgttgttcttctaattggaattgttccttcaggacatga 509  Q
    ||||||||||||||||||  ||  |||||||||||||||||||||||    
T  15247196 tcttcttttgttgttctttgaacaggaattgttccttcaggacatga 15247150  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 512
Target Start/End: Original strand, 29215061 - 29215097
Alignment:
Q  476 ttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||||| |||||||||||||| |||||||||||    
T  29215061 ttcttctaatcggaattgttccttctggacatgattc 29215097  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 512
Target Start/End: Original strand, 43815075 - 43815139
Alignment:
Q  448 ccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||||| | ||||||| || |||||||||||||||||||||||| |||||||||||||||||    
T  43815075 ccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattc 43815139  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 43814554 - 43814619
Alignment:
Q  11 cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgttta 79  Q
    |||||| || ||||||||||||||| ||||||   ||||| ||||| ||||| ||||||||||||||||    
T  43814554 cagagaggacccatatttgagccaaactgaat---tcttgactttccacatgtggggcccacacgttta 43814619  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 512
Target Start/End: Original strand, 30931063 - 30931136
Alignment:
Q  439 tcaatagatccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||||| | ||||||| | |||||||||| | ||| |||||||||||||||||||||||| |||||||||||    
T  30931063 tcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttctggacatgattc 30931136  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 30910155 - 30910201
Alignment:
Q  466 tcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||    
T  30910155 tctttttttgttcttctaattggaattgttccttctgaacatgattc 30910201  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 30919578 - 30919649
Alignment:
Q  441 aatagatccagctcttgagatgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    |||||| | ||||||| | |||||||||| | ||||||||||||||||||  | |||||| |||||||||||    
T  30919578 aatagagctagctcttaatatgtcttcttcttttgttcttctaattggaacagatccttctggacatgattc 30919649  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 30928679 - 30928808
Alignment:
Q  21 ccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatat 120  Q
    ||||||||||| |||||||||||||| ||    ||| ||||| || |||||||  |||||  |||||| |||||||||||||  ||| ||  ||||| |     
T  30928679 ccatatttgagacaagctgaattcattttcatcttctacatgtggagcccacaaatttattgtagcctttgctccatagtatcgatctccagtcacagac 30928778  T
Q  121 ccaactgaatgctatgcagtgtggagcaat 150  Q
    |||  |||||||| |||||||| |||||||    
T  30928779 ccatatgaatgctgtgcagtgtagagcaat 30928808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 14496644 - 14496744
Alignment:
Q  33 caagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatatccaactgaatgc 132  Q
    |||||||||||||| |||| || | ||| | |||||||||||||||||  |||||| |||||||||||||  ||  ||  ||||||||||||||| ||||    
T  14496644 caagctgaattcatattggtttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcacatatccaactgcatgc 14496743  T
Q  133 t 133  Q
    |    
T  14496744 t 14496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 512
Target Start/End: Original strand, 14497577 - 14497629
Alignment:
Q  460 atgtcttcttttgttgttcttctaattggaattgttccttcaggacatgattc 512  Q
    ||||||| || ||||||||||||||| |||||||||||||| |||||||||||    
T  14497577 atgtcttgttctgttgttcttctaatcggaattgttccttctggacatgattc 14497629  T

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