View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040_low_22 (Length: 216)
Name: NF5040_low_22
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 42693678 - 42693855
Alignment:
| Q |
23 |
acctgctggagtcatcacactgcacgtcctttgagtttgttagcctcattgccatgtg-taactaactttccaatcttcttactatgcattcataactaa |
121 |
Q |
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| T |
42693678 |
acctgctggagtcatcacactgcatgtcctttgagtttgttagcctcattgctatgtgattactaactttccaatcttcttactatgtattcataactaa |
42693777 |
T |
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| Q |
122 |
atattttctacattcggaagatatataatctttcagctgcagaaaaacgtaatattgtttttattcatgtggtatatt |
199 |
Q |
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| T |
42693778 |
atattttctacattcgaaagatatataatctttcagctgcagaaaaacgtaatattgtctctattcatgcggtatatt |
42693855 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 41076118 - 41076032
Alignment:
| Q |
115 |
taactaaatattttctacattcggaagatatata--atctttcagctgcagaaaaacgtaatattgtttttattcatgtggtatatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||| | |||||||||||||||| |
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| T |
41076118 |
taactaaatattttctacattcggaagatatatataatctttaagctgcagaaaaatgtaaaattgtctcaattcatgtggtatatt |
41076032 |
T |
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