View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040_low_6 (Length: 418)
Name: NF5040_low_6
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 48961202 - 48960800
Alignment:
| Q |
1 |
agaaataaggtgatcaacaaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961202 |
agaaataaggtgatcaacaaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagt |
48961103 |
T |
|
| Q |
101 |
ttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961102 |
ttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagcc |
48961003 |
T |
|
| Q |
201 |
acttgattagttcaataactccctctttgaagaagcattgtccttgtgtggatcgtgattgtgcaacattttcccaaagactctcaaatcaatgaagatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961002 |
acttgattagttcaataactccctctttgaagaagcattgtccttgtgtgtatcgtgattgtgcaacattttcccaaagactctcaaatcaatgaagatt |
48960903 |
T |
|
| Q |
301 |
actgaagagtaactacattgctactctgacaaatttactatgaatttcagatttgtttttctcaactactttgaaatttagtcagtaaaattattaagtt |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48960902 |
gctgaagagtaattacattgctactctgacaaatttactatgaatttcagatttgtttttctcaactactttgaaatttagtcagtaaaattattaagtt |
48960803 |
T |
|
| Q |
401 |
tgt |
403 |
Q |
| |
|
||| |
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|
| T |
48960802 |
tgt |
48960800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 48958037 - 48957841
Alignment:
| Q |
19 |
aaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatat |
118 |
Q |
| |
|
||||||| |||||| ||||| |||| | ||| |||||||||||||||||||| || || || | || |||||||| |||||| || || ||||||| | |
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| T |
48958037 |
aaagatagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacac |
48957938 |
T |
|
| Q |
119 |
gagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaa |
215 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| |||||| || |||| ||||||||||||||| | ||||| || | ||| |||||||||| ||||| |
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|
| T |
48957937 |
gagctgttcaagaaggtggatcatctcataacaatttgttgtctttgattgatgatcttaaacaaatgagaaactgcaagacacttgattaattcaa |
48957841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 48965213 - 48965025
Alignment:
| Q |
28 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
127 |
Q |
| |
|
||||||||||| ||||| | ||| |||||| ||||||||||||| || | || ||| | ||||||| ||||||||| || ||||||| | |||| ||| |
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|
| T |
48965213 |
atagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattc |
48965114 |
T |
|
| Q |
128 |
aagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaat |
216 |
Q |
| |
|
||| ||| ||||| |||||||| |||||| | || || ||||||||||| |||||||||||||| || |||||| |||| ||| ||||| |
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|
| T |
48965113 |
aagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaagccaattgagtagctcaat |
48965025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 48967282 - 48967177
Alignment:
| Q |
88 |
cgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattga |
187 |
Q |
| |
|
||||||||||| ||||| || ||||||| | |||| |||||| ||| |||| ||| |||||||||| || ||||| |||||||||||||||||| ||| |
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|
| T |
48967282 |
cgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatga |
48967183 |
T |
|
| Q |
188 |
gagaca |
193 |
Q |
| |
|
|||||| |
|
|
| T |
48967182 |
gagaca |
48967177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 28385225 - 28385037
Alignment:
| Q |
21 |
agataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatga |
120 |
Q |
| |
|
|||||| ||||||||||| |||| ||||| ||||||||||| |||||||| ||| |||| |||| |||||||||||||| || || ||||||| | || |
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|
| T |
28385225 |
agataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacga |
28385126 |
T |
|
| Q |
121 |
gctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
209 |
Q |
| |
|
|||||| ||| ||| || || ||| ||||||||||| | |||||||| || || |||||||||||||||||||| || |||| |||||| |
|
|
| T |
28385125 |
gctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta |
28385037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 12540569 - 12540388
Alignment:
| Q |
28 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
127 |
Q |
| |
|
||||||||||| |||| | ||| ||||| |||||| ||||||| ||| |||| |||| ||||| |||||| |||| || ||||||| | ||||||||| |
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|
| T |
12540569 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
12540470 |
T |
|
| Q |
128 |
aagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
209 |
Q |
| |
|
||| ||| || || ||||||||||||||| | |||| || || || |||||||||| |||||| | ||||||| |||||| |
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|
| T |
12540469 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgatta |
12540388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 13448247 - 13448083
Alignment:
| Q |
28 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
127 |
Q |
| |
|
||||||||||| || || | ||| |||||||||||||||||||| ||| |||| || | ||||||||||||||||| || || |||||| |||| ||| |
|
|
| T |
13448247 |
atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattc |
13448148 |
T |
|
| Q |
128 |
aagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagac |
192 |
Q |
| |
|
||| ||| ||||| ||| ||||||||||| ||||||| ||||| || |||||||||| ||||||| |
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|
| T |
13448147 |
aagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
13448083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 13454728 - 13454557
Alignment:
| Q |
18 |
caaagataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctata |
117 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||| |||| ||||||||||||||| || |||| || ||||||||||||||||| || ||||||| | |
|
|
| T |
13454728 |
caaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctaca |
13454629 |
T |
|
| Q |
118 |
tgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgaga |
189 |
Q |
| |
|
|||| ||||| ||| ||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
13454628 |
caagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgaga |
13454557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 13440090 - 13439920
Alignment:
| Q |
22 |
gataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgag |
121 |
Q |
| |
|
||||| ||||||||||| ||||| | ||| ||||| |||||||||||| || |||| || | | ||||| ||||||||| || ||||||| | || |
|
|
| T |
13440090 |
gataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaag |
13439991 |
T |
|
| Q |
122 |
ctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagac |
192 |
Q |
| |
|
|| |||||| ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
13439990 |
ctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagac |
13439920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 12641775 - 12641954
Alignment:
| Q |
27 |
tatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgtt |
126 |
Q |
| |
|
||||||||| || ||||| | ||| ||||||| |||||||||||| | || || |||| ||||||| |||||||||| | ||||||| | |||||| |
|
|
| T |
12641775 |
tatagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgtt |
12641874 |
T |
|
| Q |
127 |
caagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttga |
206 |
Q |
| |
|
||| |||||| || |||||||| |||||| ||||||| ||| | ||||||||||||| ||||||| | || |||||||| |
|
|
| T |
12641875 |
gaagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttga |
12641954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 3417822 - 3418003
Alignment:
| Q |
28 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
127 |
Q |
| |
|
|||||||||||| |||| | ||| |||||| || ||||||| || |||| ||| |||| |||||||||||| |||| || ||||||| | ||||| ||| |
|
|
| T |
3417822 |
atagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattc |
3417921 |
T |
|
| Q |
128 |
aagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
209 |
Q |
| |
|
||| ||| || || || ||| |||||||| | |||| || || || ||||||| ||||||||| | |||||||||||||| |
|
|
| T |
3417922 |
aagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgatta |
3418003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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