View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040_low_7 (Length: 408)

Name: NF5040_low_7
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040_low_7
NF5040_low_7
[»] chr8 (23 HSPs)
chr8 (28-408)||(4383826-4384207)
chr8 (28-135)||(42636330-42636438)
chr8 (28-109)||(28207658-28207741)
chr8 (35-112)||(36355944-36356022)
chr8 (28-148)||(1369810-1369931)
chr8 (28-136)||(27801189-27801298)
chr8 (39-144)||(2258046-2258152)
chr8 (28-137)||(37427225-37427334)
chr8 (28-128)||(12954762-12954863)
chr8 (28-103)||(35901965-35902041)
chr8 (28-133)||(33013079-33013184)
chr8 (28-108)||(1135195-1135276)
chr8 (31-103)||(12684490-12684563)
chr8 (35-111)||(3146077-3146158)
chr8 (28-147)||(9735257-9735376)
chr8 (28-115)||(33949534-33949622)
chr8 (28-86)||(3520821-3520880)
chr8 (28-109)||(884451-884532)
chr8 (28-72)||(37813430-37813474)
chr8 (38-136)||(12829836-12829933)
chr8 (43-136)||(31265046-31265139)
chr8 (28-72)||(24695781-24695825)
chr8 (76-136)||(24733254-24733314)
[»] chr2 (17 HSPs)
chr2 (28-140)||(1334843-1334956)
chr2 (28-133)||(31452313-31452418)
chr2 (28-111)||(19890177-19890261)
chr2 (28-108)||(9448945-9449026)
chr2 (40-105)||(33074868-33074933)
chr2 (28-113)||(29239235-29239321)
chr2 (44-105)||(31017302-31017364)
chr2 (28-127)||(41933165-41933265)
chr2 (33-139)||(4762388-4762495)
chr2 (28-125)||(34904762-34904860)
chr2 (99-148)||(20128435-20128484)
chr2 (33-85)||(11944888-11944940)
chr2 (35-72)||(14295669-14295706)
chr2 (43-136)||(18684411-18684504)
chr2 (98-135)||(32859890-32859927)
chr2 (28-65)||(37993112-37993149)
chr2 (35-145)||(15505585-15505697)
[»] chr5 (19 HSPs)
chr5 (35-136)||(18229565-18229667)
chr5 (28-111)||(7719238-7719322)
chr5 (28-145)||(30104838-30104956)
chr5 (28-106)||(9276573-9276652)
chr5 (28-134)||(16667257-16667364)
chr5 (28-128)||(3140848-3140949)
chr5 (28-135)||(13480053-13480162)
chr5 (28-135)||(30501103-30501212)
chr5 (28-135)||(30541446-30541555)
chr5 (28-141)||(112443-112558)
chr5 (49-114)||(7968445-7968511)
chr5 (28-105)||(8221156-8221234)
chr5 (28-137)||(17692296-17692405)
chr5 (33-81)||(2918615-2918664)
chr5 (38-136)||(34899100-34899198)
chr5 (35-85)||(40530449-40530500)
chr5 (28-109)||(15720101-15720183)
chr5 (28-128)||(8208213-8208314)
chr5 (28-136)||(39558730-39558839)
[»] chr4 (36 HSPs)
chr4 (28-137)||(7444347-7444457)
chr4 (28-133)||(51834948-51835054)
chr4 (28-127)||(7852516-7852616)
chr4 (35-105)||(35777693-35777764)
chr4 (28-103)||(31429311-31429387)
chr4 (28-137)||(8261142-8261252)
chr4 (28-137)||(8274559-8274669)
chr4 (33-114)||(8297910-8297992)
chr4 (28-144)||(50341822-50341939)
chr4 (28-146)||(37440860-37440980)
chr4 (33-136)||(45900112-45900216)
chr4 (38-145)||(47995691-47995799)
chr4 (42-128)||(24229617-24229704)
chr4 (28-134)||(37138127-37138234)
chr4 (28-102)||(53014203-53014278)
chr4 (35-136)||(31174614-31174716)
chr4 (28-114)||(36702818-36702901)
chr4 (62-138)||(23605628-23605705)
chr4 (28-128)||(50427023-50427124)
chr4 (35-94)||(27953046-27953106)
chr4 (28-107)||(42222989-42223069)
chr4 (28-107)||(49400646-49400726)
chr4 (35-140)||(24175358-24175464)
chr4 (28-111)||(37060582-37060667)
chr4 (35-135)||(25115228-25115328)
chr4 (38-107)||(34391699-34391769)
chr4 (35-135)||(13585226-13585326)
chr4 (35-84)||(20394679-20394728)
chr4 (28-108)||(41462083-41462164)
chr4 (28-91)||(49084408-49084473)
chr4 (33-72)||(39195755-39195794)
chr4 (43-141)||(51291135-51291233)
chr4 (28-141)||(50086367-50086480)
chr4 (98-135)||(35180569-35180606)
chr4 (78-110)||(24396271-24396303)
chr4 (28-68)||(43969217-43969257)
[»] chr7 (23 HSPs)
chr7 (28-136)||(28770511-28770620)
chr7 (28-128)||(27123308-27123409)
chr7 (28-135)||(35496537-35496645)
chr7 (28-141)||(7653610-7653724)
chr7 (28-133)||(3692911-3693018)
chr7 (28-108)||(21727397-21727478)
chr7 (28-139)||(43234824-43234935)
chr7 (28-114)||(28663124-28663211)
chr7 (40-110)||(10200615-10200685)
chr7 (28-128)||(35923478-35923575)
chr7 (33-137)||(14651352-14651457)
chr7 (28-136)||(44537375-44537484)
chr7 (28-136)||(35731321-35731429)
chr7 (28-108)||(40753938-40754018)
chr7 (33-111)||(25886209-25886288)
chr7 (28-110)||(39320971-39321054)
chr7 (50-105)||(48488172-48488228)
chr7 (33-111)||(34117859-34117938)
chr7 (28-114)||(43224072-43224159)
chr7 (35-135)||(9718959-9719059)
chr7 (28-85)||(27337731-27337789)
chr7 (28-80)||(42936041-42936093)
chr7 (35-72)||(44592907-44592944)
[»] chr1 (18 HSPs)
chr1 (28-136)||(2864176-2864284)
chr1 (29-134)||(34409769-34409874)
chr1 (33-136)||(44829311-44829414)
chr1 (28-135)||(45640581-45640688)
chr1 (28-137)||(47187784-47187893)
chr1 (28-136)||(43396978-43397087)
chr1 (28-108)||(31889196-31889278)
chr1 (28-107)||(6883120-6883200)
chr1 (28-136)||(38748685-38748793)
chr1 (28-108)||(39150616-39150697)
chr1 (28-136)||(3982299-3982407)
chr1 (28-81)||(38491255-38491309)
chr1 (28-141)||(44329630-44329744)
chr1 (28-72)||(34232735-34232779)
chr1 (28-68)||(39156295-39156335)
chr1 (28-85)||(8365537-8365595)
chr1 (28-96)||(40460726-40460795)
chr1 (28-96)||(32562357-32562425)
[»] chr6 (18 HSPs)
chr6 (28-107)||(1841017-1841097)
chr6 (28-136)||(32823711-32823820)
chr6 (28-113)||(31855088-31855174)
chr6 (28-108)||(17215674-17215755)
chr6 (28-128)||(7421706-7421807)
chr6 (28-141)||(27778789-27778900)
chr6 (28-128)||(28874433-28874534)
chr6 (38-128)||(30801785-30801876)
chr6 (45-141)||(30739650-30739747)
chr6 (28-133)||(24103745-24103850)
chr6 (28-112)||(9301943-9302027)
chr6 (43-134)||(34552289-34552380)
chr6 (35-128)||(2864917-2865012)
chr6 (42-108)||(1479084-1479150)
chr6 (28-72)||(2692458-2692502)
chr6 (83-135)||(7465566-7465618)
chr6 (28-145)||(9762836-9762952)
chr6 (35-138)||(19293414-19293518)
[»] scaffold0268 (1 HSPs)
scaffold0268 (35-110)||(20238-20313)
[»] scaffold0036 (1 HSPs)
scaffold0036 (28-133)||(62491-62597)
[»] scaffold0419 (1 HSPs)
scaffold0419 (28-128)||(1099-1200)
[»] chr3 (15 HSPs)
chr3 (28-135)||(42845974-42846078)
chr3 (28-102)||(40673468-40673543)
chr3 (37-144)||(12086718-12086826)
chr3 (28-96)||(16663011-16663079)
chr3 (28-110)||(24791530-24791616)
chr3 (70-137)||(41309815-41309880)
chr3 (38-112)||(51351321-51351396)
chr3 (28-136)||(48180134-48180243)
chr3 (35-133)||(29083865-29083965)
chr3 (45-108)||(7278157-7278220)
chr3 (28-108)||(26900014-26900095)
chr3 (35-127)||(52249367-52249460)
chr3 (98-147)||(52309272-52309321)
chr3 (28-72)||(45988254-45988297)
chr3 (34-86)||(52638172-52638224)
[»] scaffold1444 (1 HSPs)
scaffold1444 (34-72)||(1732-1770)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 28 - 408
Target Start/End: Complemental strand, 4384207 - 4383826
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  4384207 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaatttatcatttaaagtgcttaaagagtgtcccgagaacactcgttaa 4384108  T
Q  128 cgtttccctaaaaataaataaatggatagggtttggggcagaggtcagctattaatctcatgatcaagcagctctattatggtttacagctgcaggcagt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384107 cgtttccctaaaaataaataaatggatagggtttggggcagaggtcagctattaatctcatgatcaagcagctctattatggtttacagctgcaggcagt 4384008  T
Q  228 ccttaacctcaaacactttgacctctaaatggaccttggatgagccacatacaaaggatattagccagcacacgg-nnnnnnnntgagcacaaactgaat 326  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  4384007 ccttaacctcaaacactttgtcctctaaagggaccttggatgagccacatacaaaggatattagccagcacacggaaaaaaaaatgagcacaaactgaat 4383908  T
Q  327 acaggaatttaaatatcacttcaattaaagtaactttagtacatgttctagtatgtaatcaattaattatgtcattcacatg 408  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383907 acaggaatttaaatttcacttcaattgaagtaactttagtacatgttctagtatgtaatcaattaattatgtcattcacatg 4383826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 42636438 - 42636330
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||||  |||||| |||||||||    
T  42636438 aaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtgcttaaagagtgctccgggagcactcgtta 42636339  T
Q  127 acgtttccc 135  Q
    || ||||||    
T  42636338 acatttccc 42636330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 28207658 - 28207741
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaa-gtacttaaagagtgt 109  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| || ||||||||||||    
T  28207658 aaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaactttccatttaaaggtgcttaaagagtgt 28207741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 36356022 - 36355944
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtccc 112  Q
    ||||||| ||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  36356022 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgtccc 36355944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 1369931 - 1369810
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||| |||||||||||||||||||||| | |||||| |||  ||||||||| | ||||||| |||||||||||||| || | |||| ||||    
T  1369931 aaaagtcaactatcacaatttccaatgcattcaatagataacttttcatataaaacttattaattaaagtgcttaaagagtgtccaggaagcacttgtta 1369832  T
Q  127 acgtttccctaaaaataaataa 148  Q
    || ||||| ||||| |||||||    
T  1369831 acatttccttaaaagtaaataa 1369810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 27801298 - 27801189
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||  ||||||||| ||||||||||  |||  || |||||||||    
T  27801298 aaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaaagagtaccccaagagcactcgtta 27801199  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  27801198 acatttccct 27801189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 2258152 - 2258046
Alignment:
Q  39 attacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttcccta 137  Q
    ||||||||||  |||| ||| ||||||||||||| |||| |||||||| |||||||||| |||||||| |||||||||  |||||| |||| ||| ||||    
T  2258152 attacaatttttaatgtatttaatacacaacttttcatttaaaacttaccatttaaagtgcttaaagattgtcccgggtgcactcgataacattttccta 2258053  T
Q  138 aaaataa 144  Q
    |||||||    
T  2258052 aaaataa 2258046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 37427225 - 37427334
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    ||||||||| ||||||||||| ||||| | ||||||| ||||||| |||||||| |||| |||||||||| |||||||||||| ||||   |||||||||    
T  37427225 aaaaatcaattattacaattttcaatgtaatcaatactcaacttttcattaaaatcttaccatttaaagtgcttaaagagtgt-ccggaggcactcgtta 37427323  T
Q  127 acgtttcccta 137  Q
    || ||||||||    
T  37427324 acatttcccta 37427334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 12954762 - 12954863
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    ||||||||||||||| ||||| ||||  ||| ||||||||| ||| || |||||| |||||||||||||||| ||||||||||| |||  ||||||||||    
T  12954762 aaaaatcaactattataattttcaatagatttaatacacaatttttcaataaaaatttatcatttaaagtacataaagagtgtctcggagacactcgtta 12954861  T
Q  127 ac 128  Q
    ||    
T  12954862 ac 12954863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 35901965 - 35902041
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaa 103  Q
    |||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| | ||||||    
T  35901965 aaaagtcaattattacaatttccaatgcattcaatacagaacttttcattaaaaacttattatttaaaatgcttaaa 35902041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 33013079 - 33013184
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||||||||| | |||||||||||| |||||| || ||||||  | ||||||| ||||||||||| ||| ||| |||||||||    
T  33013079 aaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttactaattaaagtgcttaaagagtg-cccaggagcactcgtta 33013177  T
Q  127 acgtttc 133  Q
    || ||||    
T  33013178 acatttc 33013184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 1135195 - 1135276
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||| |||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||| ||||||||||  ||||||||||    
T  1135195 aaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaaagtgtttaaagagtg 1135276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 12684563 - 12684490
Alignment:
Q  31 aatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaa 103  Q
    ||||||||||||||||||| |||||||||| |||| ||| ||| |||||||| |||| ||||||||| ||||||    
T  12684563 aatcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttattatttaaagtgcttaaa 12684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 3146077 - 3146158
Alignment:
Q  35 aactattacaatttccaatgcattca----atacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcc 111  Q
    ||||||||||||||||||||||||||    || |||| | ||||||||||||||||  ||||||||| ||||||||||||||    
T  3146077 aactattacaatttccaatgcattcattcaatgcacaccgtttcattaaaaacttactatttaaagtgcttaaagagtgtcc 3146158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 9735376 - 9735257
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| ||||||||||  | || |||| |||| ||||||||||||| ||||||||| |||||||||||| || ||||| |||||| | | |||||||||||    
T  9735376 aaaagtcaactattatgactttcaatacatttaatacacaacttttcattaaaaatttatcatttaaaatatttaaaaagtgtctc-gaaacactcgtta 9735278  T
Q  127 acgtttccctaaaaataaata 147  Q
    || ||| ||  ||||||||||    
T  9735277 acattttccataaaataaata 9735257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 33949622 - 33949534
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccggg 115  Q
    |||| ||||||||||||||||| |||||| |||||||||||| |||||| || ||||||  | |||||||  |||||||||||| ||||    
T  33949622 aaaattcaactattacaatttcaaatgcactcaatacacaacttttcataaataacttactaattaaagtgtttaaagagtgtctcggg 33949534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 3520880 - 3520821
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttat 86  Q
    ||||||||||||||||| |||  ||||||||||||||| ||| |||||||||||||||||    
T  3520880 aaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaacttat 3520821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 884451 - 884532
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgt 109  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||| ||| ||||||||||||   ||||||||| ||||||||||||    
T  884451 aaaaatcaattattacaattttcaatg-atttaatacacaatttttcattaaaaactttcaatttaaagtgcttaaagagtgt 884532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 37813474 - 37813430
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||    
T  37813474 aaaagtcaaccattacaatttccaatgcattgaatacacaacttt 37813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 12829933 - 12829836
Alignment:
Q  38 tattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccct 136  Q
    ||||||||||  |||||||||||||| | || ||| ||||||||||||| |||||||||| |||||| |||||   |||| ||||||||||| |||||||    
T  12829933 tattacaattaacaatgcattcaatatataatttttcattaaaaacttaccatttaaagtgcttaaa-agtgt-ttgggagcactcgttaacatttccct 12829836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 31265046 - 31265139
Alignment:
Q  43 caatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccct 136  Q
    |||||||||||| ||| ||||||||| |||   |||||| |||  |||| | |  ||||||||||| ||||||| ||||||||||| |||||||    
T  31265046 caatttccaatgtattaaatacacaagttttcataaaaagttactattttaggctcttaaagagtgccccgggagcactcgttaacatttccct 31265139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 24695781 - 24695825
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||    
T  24695781 aaaagtcaactattacaatttctaatgcagtgaatacacaacttt 24695825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 24733254 - 24733314
Alignment:
Q  76 taaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccct 136  Q
    ||||||||||  ||| || |||||||||||||| |||||  |||||||||||| |||||||    
T  24733254 taaaaacttactattaaaggtacttaaagagtgccccggagacactcgttaacatttccct 24733314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 1334956 - 1334843
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||  ||||| ||| ||||||    
T  1334956 aaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatcatttaaagtgcttaaagagtgctccggggacaatcgtta 1334857  T
Q  127 acgtttccctaaaa 140  Q
    || ||| |||||||    
T  1334856 acattttcctaaaa 1334843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 31452418 - 31452313
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaa 127  Q
    |||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||||| |||||| | ||| |||||||||||||||||    
T  31452418 aaaagtcaacaattacaattttcaatgcattcaatacacaacttttattaaaaacttactatttaaagtgcttaaataatgttccgggaacactcgttaa 31452319  T
Q  128 cgtttc 133  Q
    | ||||    
T  31452318 catttc 31452313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 19890261 - 19890177
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcc 111  Q
    |||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||| |||||||| |||||    
T  19890261 aaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaacttattattttaagtgcttaaagaatgtcc 19890177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 9449026 - 9448945
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    ||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||  ||||||||||    
T  9449026 aaaaatcaactattataattttcaatacattcaatacacaacttttcattaaaaacttaccatttaaagtgtttaaagagtg 9448945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 33074933 - 33074868
Alignment:
Q  40 ttacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaaga 105  Q
    |||||||||| ||| |||| ||||||||||||| | ||||||||||| ||||||||||||||||||    
T  33074933 ttacaatttctaatacattaaatacacaacttttaataaaaacttataatttaaagtacttaaaga 33074868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 29239321 - 29239235
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaataca-caactttcattaaaaacttatcatttaaagtacttaaagagtgtcccg 113  Q
    |||| |||||||||||||||| |||||||||||||||| ||  |||||||||| | |||  | ||||||| ||||||||||||||||    
T  29239321 aaaagtcaactattacaattttcaatgcattcaatacaccatttttcattaaagatttactaattaaagtgcttaaagagtgtcccg 29239235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 31017364 - 31017302
Alignment:
Q  44 aatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaaga 105  Q
    ||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  31017364 aattttcaatgcatttaatacacaacttttcattaaaaacttttcatttaaagtgcttaaaga 31017302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 41933165 - 41933265
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttc-attaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||| ||||||| ||| || ||||||||  || ||||| |||  | ||||||| |||||||||||  ||||||||||||||||    
T  41933165 aaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttactaattaaagtgcttaaagagtgctccgggaacactcgtta 41933264  T
Q  127 a 127  Q
    |    
T  41933265 a 41933265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 4762388 - 4762495
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtt 131  Q
    |||||||||| ||||| |||||||||||||||||||  ||| |||||||| |||  |||||||||  ||||| |||| | |  ||||| |||||||| ||    
T  4762388 tcaactattataattttcaatgcattcaatacacaattttttattaaaaatttactatttaaagtgattaaaaagtgcctcaagaacattcgttaacatt 4762487  T
Q  132 tccctaaa 139  Q
    ||||||||    
T  4762488 tccctaaa 4762495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 34904860 - 34904762
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtt 125  Q
    |||||||||||||||||||||  |||| ||| |||||| || ||| |||||| ||||||  ||||||||| |||||||||||  |||| | ||||||||    
T  34904860 aaaaatcaactattacaatttttaatgaatttaatacaaaatttttcattaataacttacaatttaaagtgcttaaagagtgctccggaagcactcgtt 34904762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 20128435 - 20128484
Alignment:
Q  99 ttaaagagtgtcccgggaacactcgttaacgtttccctaaaaataaataa 148  Q
    |||||||||||||| ||||||||| ||||||||| || ||||||||||||    
T  20128435 ttaaagagtgtcccaggaacactcattaacgttttccaaaaaataaataa 20128484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 11944940 - 11944888
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaactttcattaaaaactta 85  Q
    |||||||||||||||| ||||||||| |||||||||||||   ||||||||||    
T  11944940 tcaactattacaattttcaatgcattgaatacacaacttttcataaaaactta 11944888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 14295669 - 14295706
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  14295669 aactattacaattttcaatgcattgaatacacaacttt 14295706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 18684411 - 18684504
Alignment:
Q  43 caatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccct 136  Q
    |||||||||||| ||| ||||||||| |||   |||||| |||| |||  | |  |||||||||||||| |||| ||||||||||| |||||||    
T  18684411 caatttccaatgtattaaatacacaaattttcataaaaagttattattctaggctcttaaagagtgtccagggagcactcgttaacatttccct 18684504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 32859890 - 32859927
Alignment:
Q  98 cttaaagagtgtcccgggaacactcgttaacgtttccc 135  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  32859890 cttaaagagtgccccgggaacactcgttaacatttccc 32859927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 37993112 - 37993149
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaataca 65  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  37993112 aaaaatcaactattacaattttcaatgcatttaataca 37993149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 15505585 - 15505697
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttc 133  Q
    |||||||| ||||| |||| ||||||||||||||| |||||||  |||||||  |||||||||  || ||||||| | | |  |||||||||||| |||     
T  15505585 aactattataattttcaatacattcaatacacaacttttcattccaaacttactatttaaagtgtttcaagagtgccacagagacactcgttaacatttt 15505684  T
Q  134 ccta-aaaataaa 145  Q
    |||| ||||||||    
T  15505685 cctataaaataaa 15505697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 18229667 - 18229565
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttc 133  Q
    ||||||||||||||||||| ||||||||| |||| ||| ||||||||||||| |||||||||| ||||||||||||||||| | ||||||||||| ||||    
T  18229667 aactattacaatttccaatacattcaataaacaatttttcattaaaaacttaccatttaaagtgcttaaagagtgtcccggaagcactcgttaacatttc 18229568  T
Q  134 cct 136  Q
    |||    
T  18229567 cct 18229565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 7719238 - 7719322
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcc 111  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||    
T  7719238 aaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttattatttaaagtgcttaaaaagtgtcc 7719322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 30104838 - 30104956
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||  ||||||||||  |||||  |||| ||||    
T  30104838 aaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttaccacttaaagtgtttaaagagtgctccgggggcactagtta 30104937  T
Q  127 acgtttccctaaaaataaa 145  Q
    || |||||| | |||||||    
T  30104938 acatttcccaacaaataaa 30104956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 9276652 - 9276573
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagag 106  Q
    ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||  ||||||||| |||||||||    
T  9276652 aaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatttaaagtgcttaaagag 9276573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 16667364 - 16667257
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||| |||||||||||||||| |||||||||||||| ||| |||||||||||||  ||||||||| |||||| ||||| | ||  ||||||||||    
T  16667364 aaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaaaagtgttctggagacactcgtta 16667265  T
Q  127 acgtttcc 134  Q
    || |||||    
T  16667264 acatttcc 16667257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 3140848 - 3140949
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttc-attaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||| |||| |||| |||| ||||||||  ||| ||||||||| |||||||||  |||||| ||||||||||||||||| |||    
T  3140848 aaaagtcaactattacaattttcaattcatttaatatacaactttttatttaaaacttattatttaaagtgtttaaagtgtgtcccgggaacactcatta 3140947  T
Q  127 ac 128  Q
    ||    
T  3140948 ac 3140949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 13480053 - 13480162
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtc-ccgggaacactcgtt 125  Q
    |||||| |||||||| ||||| |||||||||||||||||||  ||| |||||||| |||| |||||||||  |||||||||||| |||| || ||| |||    
T  13480053 aaaaattaactattataattttcaatgcattcaatacacaatattttattaaaaatttattatttaaagtggttaaagagtgtcaccggaaaaacttgtt 13480152  T
Q  126 aacgtttccc 135  Q
    ||| ||||||    
T  13480153 aacatttccc 13480162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 30501212 - 30501103
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtccc-gggaacactcgtt 125  Q
    |||| |||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||  ||||||||| |||||  |||| ||| |||  ||||||||    
T  30501212 aaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaacaagtgccccggggggcactcgtt 30501113  T
Q  126 aacgtttccc 135  Q
    ||| ||||||    
T  30501112 aacatttccc 30501103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 30541555 - 30541446
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtccc-gggaacactcgtt 125  Q
    |||| |||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||  ||||||||| |||||  |||| ||| |||  ||||||||    
T  30541555 aaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaacaagtgccccggggggcactcgtt 30541456  T
Q  126 aacgtttccc 135  Q
    ||| ||||||    
T  30541455 aacatttccc 30541446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 112558 - 112443
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| ||||||  |||||||| ||||| ||| ||||||||| ||| ||||||||| || | ||||||||| ||||||||||||||| ||  |||||||||    
T  112558 aaaagtcaactgatacaattttcaatgtatttaatacacaatttttcattaaaaatttgttatttaaagtgcttaaagagtgtccccggggcactcgtta 112459  T
Q  127 ac-gtttccctaaaaa 141  Q
    || |||||| ||||||    
T  112458 acagtttccttaaaaa 112443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 7968445 - 7968511
Alignment:
Q  49 ccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgg 114  Q
    |||||||||| ||||||||||||| |||||||||||||  ||||||||| ||||||||||| |||||    
T  7968445 ccaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgccccgg 7968511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 8221156 - 8221234
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaaga 105  Q
    |||| ||||||||||||| || |||||||||||||||||||  ||| ||||||||||||  ||||||| | ||||||||    
T  8221156 aaaagtcaactattacaactttcaatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaaaga 8221234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 17692296 - 17692405
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||| ||||||||| ||||||| | | |||||||| ||||||||||||| ||  |||| |||| ||||||||||  ||||||  |||||||||    
T  17692296 aaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactattttaagtgcttaaagagt-acccgggggcactcgtta 17692394  T
Q  127 acgtttcccta 137  Q
    || ||||||||    
T  17692395 acatttcccta 17692405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 2918664 - 2918615
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaa 81  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  2918664 tcaactattataatttccaatgcatttaatacacaacttttcattaaaaa 2918615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 34899198 - 34899100
Alignment:
Q  38 tattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccct 136  Q
    |||||||||||| |||||||| |||| | ||| ||||||| ||||||||  |||||||||  |||||||||| ||| ||  ||||||||||| |||||||    
T  34899198 tattacaatttctaatgcatttaatatataacttttcatttaaaacttactatttaaagtgtttaaagagtg-ccctggtgcactcgttaacatttccct 34899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 40530500 - 40530449
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaact-ttcattaaaaactta 85  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||||||||||    
T  40530500 aactatcacaatttctaattcattcaatacacaactattcattaaaaactta 40530449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 15720101 - 15720183
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgt 109  Q
    |||| |||||||||||||||||||||| | | |||||||||| |||||| || ||||||  | |||||||  |||||||||||    
T  15720101 aaaagtcaactattacaatttccaatgaacttaatacacaacttttcataaagaacttactaattaaagtgtttaaagagtgt 15720183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 8208213 - 8208314
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||| |||||||||||  |||||||||| |||| ||| ||||||  |||||||||||||||| ||  |||||||||   |||| | |||||||||    
T  8208213 aaaagtcaattattacaatttttaatgcattcattacataacttttcatataaaacttatcatttaatgtgtttaaagagtactccggaagcactcgtta 8208312  T
Q  127 ac 128  Q
    ||    
T  8208313 ac 8208314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 39558839 - 39558730
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||| |||||||||||||||||||  |||||| || ||||| ||||||||||  ||||||| | |||||  ||||  |||   ||||||||||    
T  39558839 aaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttactatttaaaatgcttaagaagtgctccgaagacactcgtta 39558740  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  39558739 acatttccct 39558730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 7444457 - 7444347
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||| |||||||||||  |||||||||  |||||||||||| ||||| |||||||||    
T  7444457 aaaagtcaactattacaattttcaatgcattcaatacacaacttttctttaaaaacttagtatttaaagtgtttaaagagtgtctcgggagcactcgtta 7444358  T
Q  127 acgtttcccta 137  Q
    || ||||||||    
T  7444357 acatttcccta 7444347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 51834948 - 51835054
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||  |||||||||  |||||||||||| |||||||||||||||    
T  51834948 aaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttactatttaaagtgtttaaagagtgtctcgggaacactcgtta 51835047  T
Q  127 acgtttc 133  Q
    || ||||    
T  51835048 acatttc 51835054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 7852616 - 7852516
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||  ||||||||| ||||||||||| |||||   |||||||||    
T  7852616 aaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgccccggtggcactcgtta 7852517  T
Q  127 a 127  Q
    |    
T  7852516 a 7852516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 35777764 - 35777693
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaaga 105  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  35777764 aactattacaatttctaatgcattcaatacacaacttttcattaaaaacttaccatttaaagtgcttaaaga 35777693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 31429311 - 31429387
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  | ||||||| ||||||    
T  31429311 aaaaatcaactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaaa 31429387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 8261142 - 8261252
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||| ||||||||| ||||||||| |||||| |||||| |||||||||||||  ||||||||| ||| ||||||| ||| |  ||||||||||    
T  8261142 aaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcgtta 8261241  T
Q  127 acgtttcccta 137  Q
    || ||||||||    
T  8261242 acatttcccta 8261252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 8274559 - 8274669
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||| ||||||||| ||||||||| |||||| |||||| |||||||||||||  ||||||||| ||| ||||||| ||| |  ||||||||||    
T  8274559 aaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcgtta 8274658  T
Q  127 acgtttcccta 137  Q
    || ||||||||    
T  8274659 acatttcccta 8274669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 8297910 - 8297992
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgg 114  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||  ||||||||| |||||||| || |||||    
T  8297910 tcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaagattgccccgg 8297992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 50341939 - 50341822
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||||||| |||||||||||||||| ||||||| |||| |||  || |||||| ||||||||||  ||||  |||||| ||||    
T  50341939 aaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaaagagtaccccgaaaacacttgtta 50341840  T
Q  127 acgtttccctaaaaataa 144  Q
    || ||||||  |||||||    
T  50341839 acatttcccataaaataa 50341822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 37440860 - 37440980
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||| |||||  ||||||||| || ||| ||||| ||| ||| |||||||||||||||||||||||| |  |  |||||||||    
T  37440860 aaaagtcaactattacaattttcaatgtgttcaatacataatttttcattataaatttaccatttaaagtacttaaagagtgtctcaagggcactcgtta 37440959  T
Q  127 acgtttccc-taaaaataaat 146  Q
    || |||||| |||||||||||    
T  37440960 acatttcccttaaaaataaat 37440980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 45900216 - 45900112
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtt 131  Q
    |||||||| |||||||||||||||||||||||||||| ||||||   |||||||  | ||||||| ||||||||||| ||| ||  ||||||||||| ||    
T  45900216 tcaactatcacaatttccaatgcattcaatacacaacttttcatatgaaacttactaattaaagtgcttaaagagtgcccccggggcactcgttaacatt 45900117  T
Q  132 tccct 136  Q
    |||||    
T  45900116 tccct 45900112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 47995799 - 47995691
Alignment:
Q  38 tattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccct 136  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||  ||||||||| ||||||||| ||| | || ||||| |||||| ||| |||    
T  47995799 tattacaattttcaatgcattcaatacataacttttcattaaaaacttacaatttaaagtgcttaaagagagtctcagggacacttgttaacattttcct 47995700  T
Q  137 aaaaataaa 145  Q
     || |||||    
T  47995699 taatataaa 47995691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 24229704 - 24229617
Alignment:
Q  42 acaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaac 128  Q
    ||||||| ||||||||| ||||||||| ||| |||||||||||| | ||||||||| ||||||||||||| ||||| ||| |||||||    
T  24229704 acaattttcaatgcatttaatacacaatttttcattaaaaactttttatttaaagtgcttaaagagtgtctcgggagcacccgttaac 24229617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 37138234 - 37138127
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||| ||||||||||||| |||||||||||| |||||| || |||||   | ||||| | ||||||||||||||||| | |||||||||    
T  37138234 aaaagtcaactattataatttccaatgcactcaatacacaacttttcataaagaactttctaattaaattgcttaaagagtgtcccggaagcactcgtta 37138135  T
Q  127 acgtttcc 134  Q
    || |||||    
T  37138134 acatttcc 37138127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 53014278 - 53014203
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaa 102  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||| || |||||||||| |||||    
T  53014278 aaaaattaactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaaagtgcttaa 53014203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 31174716 - 31174614
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttc 133  Q
    |||| ||||||||| ||||  ||||| ||||||||||| ||||||||| ||||||||||||||| ||||||| | |||| | | ||||||||||| ||||    
T  31174716 aactgttacaattttcaatatattcattacacaacttttcattaaaaatttatcatttaaagtatttaaagaatatcccagaagcactcgttaacatttc 31174617  T
Q  134 cct 136  Q
    |||    
T  31174616 cct 31174614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 36702818 - 36702901
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgg 114  Q
    |||| |||| ||||||||||| |||||||||||||||||||  ||||||||||||||||    ||||||| |||||||||||||||||    
T  36702818 aaaagtcaattattacaattttcaatgcattcaatacacaatttttcattaaaaactta----ttaaagtgcttaaagagtgtcccgg 36702901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 23605705 - 23605628
Alignment:
Q  62 tacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccctaa 138  Q
    ||||||||||| ||||||||||||| |||||||||| |||||| ||| ||||||  |||||||||||| |||||||||    
T  23605705 tacacaacttttcattaaaaacttaccatttaaagtgcttaaaaagtatcccggagacactcgttaacatttccctaa 23605628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 50427023 - 50427124
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||||||||||| |||| |||||||||| ||||||||| |||  |||||||||  |||||||||| | | ||  |||||||||    
T  50427023 aaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactatttaaagtgtttaaagagtgccacaggggcactcgtta 50427122  T
Q  127 ac 128  Q
    ||    
T  50427123 ac 50427124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 27953106 - 27953046
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaa 94  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||    
T  27953106 aactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttaccatttaaa 27953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 42222989 - 42223069
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagt 107  Q
    ||||| ||||||||| ||||| |||||||||||||||||||  ||| |||||||||||| || || |||||||||||||||    
T  42222989 aaaaaccaactattataattttcaatgcattcaatacacaattttttattaaaaacttaccactttaagtacttaaagagt 42223069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 49400646 - 49400726
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagt 107  Q
    ||||||||||||||||||||||||||| ||| ||||||| || |||||||||||  || | ||||||||| ||||||||||    
T  49400646 aaaaatcaactattacaatttccaatgtatttaatacacgacttttcattaaaattttgttatttaaagtgcttaaagagt 49400726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 24175464 - 24175358
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaactttcatta-aaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttc 133  Q
    ||||||||||||||  |||||||| |||||||||||||   || |||||||| |||||||||| ||||||||||| |||| |  ||||  ||||| ||||    
T  24175464 aactattacaattttaaatgcatttaatacacaacttttcgtacaaaacttaccatttaaagtgcttaaagagtgccccgagggcacttcttaacatttc 24175365  T
Q  134 cctaaaa 140  Q
    |||||||    
T  24175364 cctaaaa 24175358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 37060582 - 37060667
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt--cattaaaaacttatcatttaaagtacttaaagagtgtcc 111  Q
    ||||||||||||||| ||||| ||||||| | |||||| || |||  ||||||||||||| |||||||||| |||||| |||||||    
T  37060582 aaaaatcaactattataattttcaatgcaattaatacataattttttcattaaaaacttaccatttaaagtgcttaaaaagtgtcc 37060667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 25115328 - 25115228
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtactt-aaagagtgtcccgggaacactcgttaacgtttc 133  Q
    |||||||||||||||||||||| | |||||||||||||   ||||||||||  |||||||||  || |||||||| |||||| |||| ||||||| ||||    
T  25115328 aactattacaatttccaatgcagtgaatacacaactttttataaaaacttactatttaaagtgtttaaaagagtg-cccggggacacacgttaacatttc 25115230  T
Q  134 cc 135  Q
    ||    
T  25115229 cc 25115228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 34391769 - 34391699
Alignment:
Q  38 tattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagt 107  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||||||  |||| ||||  |||||||||    
T  34391769 tattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagtgtttaaagagt 34391699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 13585326 - 13585226
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttc 133  Q
    |||| ||||||||| ||||| ||||| |||| |||||| |||  |||||||| |||||||||| |||||||||||| | | | |||||||||||| ||||    
T  13585326 aactgttacaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtgt-ctgaggacactcgttaacatttc 13585228  T
Q  134 cc 135  Q
    ||    
T  13585227 cc 13585226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 20394679 - 20394728
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaactttcattaaaaactt 84  Q
    ||||||||||||||||||| |||||||||||  | |||||||||||||||    
T  20394679 aactattacaatttccaatacattcaatacaacattttcattaaaaactt 20394728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 41462083 - 41462164
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||| |||||||||||||||||  ||||||| |||||| || ||| |||||||||||||  ||||||| | |||||||||||    
T  41462083 aaaagtcaactattacaatttcttatgcatttaatacataatttttcattaaaaacttactatttaaaatgcttaaagagtg 41462164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 49084473 - 49084408
Alignment:
Q  28 aaaaatcaactattacaatttccaatg-cattcaatacacaac-tttcattaaaaacttatcattt 91  Q
    |||| |||||||||||||||| |||||  |||||||||||||| |||||||||||||||| |||||    
T  49084473 aaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttaccattt 49084408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 39195794 - 39195755
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  39195794 tcaactattacaattttcaatgcattgaatacacaacttt 39195755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 51291135 - 51291233
Alignment:
Q  43 caatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccctaaaaa 141  Q
    |||||||||||||| | ||| ||||| ||||||| |||| |||| ||||| | || ||||||||||| ||| ||  ||||||||||| ||||||||||||    
T  51291135 caatttccaatgcaataaatgcacaaactttcat-aaaatcttaccattttaggtgcttaaagagtgcccccggggcactcgttaacatttccctaaaaa 51291233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 50086480 - 50086367
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacaca-actttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    ||||||||| ||||   |||| ||||||||| |||||||| | |||||| |||  |||| || ||| ||| ||||||||||| ||||||| |||||||||    
T  50086480 aaaaatcaaatattttgattttcaatgcattgaatacacatattttcat-aaatgcttaccacttatagttcttaaagagtgccccgggagcactcgtta 50086382  T
Q  127 acgtttccctaaaaa 141  Q
    || |||||| |||||    
T  50086381 acatttcccaaaaaa 50086367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 35180606 - 35180569
Alignment:
Q  98 cttaaagagtgtcccgggaacactcgttaacgtttccc 135  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  35180606 cttaaagagtgccccgggaacactcgttaacatttccc 35180569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 24396271 - 24396303
Alignment:
Q  78 aaaacttatcatttaaagtacttaaagagtgtc 110  Q
    |||||||| ||||||||||||||||||||||||    
T  24396271 aaaacttaccatttaaagtacttaaagagtgtc 24396303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 43969257 - 43969217
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa 68  Q
    ||||||||||||||||||||| ||||||| |||||| ||||    
T  43969257 aaaaatcaactattacaattttcaatgcactcaatatacaa 43969217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 28770511 - 28770620
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||| |||||||||||| ||||   |||||||||    
T  28770511 aaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttagagtgcttaaagagtgttccggaggcactcgtta 28770610  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  28770611 acatttccct 28770620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 27123308 - 27123409
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||||||||||||| | ||||||||||| | ||||||||||| |||||||||| ||||||||||| ||||||  |||||||||    
T  27123308 aaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttaccatttaaagtgcttaaagagtgccccgggggcactcgtta 27123407  T
Q  127 ac 128  Q
    ||    
T  27123408 ac 27123409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 35496645 - 35496537
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| ||||||||||  |||||||||| ||||||  |||||||||    
T  35496645 aaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaacttaccatttaaagtgtttaaagagtgccccgggggcactcgtta 35496546  T
Q  127 acgtttccc 135  Q
    || ||||||    
T  35496545 acatttccc 35496537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 7653610 - 7653724
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||| |||||||||| |||||| ||||||||||| |||||||||||||   |||||||| |||||||||||||||||||  ||||||||    
T  7653610 aaaagtcaactattataatttccaattcattcattacacaacttttcattaaaaacttactttttaaagtgcttaaagagtgtcccgggagaactcgtta 7653709  T
Q  127 acgtttccctaaaaa 141  Q
    || ||| ||| ||||    
T  7653710 acattttccttaaaa 7653724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 3692911 - 3693018
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcat-taaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtt 125  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||||||  |||||||||  | ||||| ||||||||||||| ||||| ||||||||||    
T  3692911 aaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatacttaaagagtgccccggaaacactcgtt 3693010  T
Q  126 aacgtttc 133  Q
    ||| ||||    
T  3693011 aacatttc 3693018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 21727478 - 21727397
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaact-ttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||| ||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| |||| |||||||||||    
T  21727478 aaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatttgaagtgcttaaagagtg 21727397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 43234824 - 43234935
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||||| ||||||||||||||||| | ||||||||||| ||| |||||||||||| |||  ||||||||| ||||||||||| |||| |  |||||||||    
T  43234824 aaaaataaactattacaatttccattacattcaatacataacttttcattaaaaatttactatttaaagtgcttaaagagtg-cccgagggcactcgtta 43234922  T
Q  127 acgtttccctaaa 139  Q
    || ||||||||||    
T  43234923 acatttccctaaa 43234935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 28663211 - 28663124
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgg 114  Q
    |||| |||||||||||||||| |||||||||||||||||||  ||||||||||| ||||  ||||||||| ||||||||||| |||||    
T  28663211 aaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaagagtgccccgg 28663124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 10200615 - 10200685
Alignment:
Q  40 ttacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtc 110  Q
    |||||||||| |||||||| |||||| |||||||  ||||||||||||||||||||| |||||||||||||    
T  10200615 ttacaatttcaaatgcattaaatacataactttctataaaaacttatcatttaaagtgcttaaagagtgtc 10200685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 35923575 - 35923478
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaa 127  Q
    |||||| |||||||||||||||||||||||||||||   |  ||||| ||||||||||| |||||||||  ||||||||||| ||||  |||||||||||    
T  35923575 aaaaataaactattacaatttccaatgcattcaata---acttttcaataaaaacttattatttaaagtgtttaaagagtgttccggagacactcgttaa 35923479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 14651457 - 14651352
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtt 131  Q
    |||||| ||||||||||||||||| ||| ||||||||||| |||||||||| ||  |||| |||| ||||||||||| |||| |  ||||||||||| ||    
T  14651457 tcaactgttacaatttccaatgcaatcattacacaacttttcattaaaaacctactattttaagtgcttaaagagtgccccgagggcactcgttaacatt 14651358  T
Q  132 tcccta 137  Q
    ||||||    
T  14651357 tcccta 14651352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 44537375 - 44537484
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||| |||||||| || ||  |||||| |||||| |||||||||||||  ||||||||| ||||||||||| ||||||  |||||||||    
T  44537375 aaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttactatttaaagtgcttaaagagtgccccgggggcactcgtta 44537474  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  44537475 acatttccct 44537484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 35731321 - 35731429
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||||||||||||||||| | |||||||||| ||| || || ||||||  | ||||||| ||||||||||| ||||||  |||||||||    
T  35731321 aaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttactaattaaagtgcttaaagagtg-cccgggggcactcgtta 35731419  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  35731420 acatttccct 35731429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 40754018 - 40753938
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||| |  ||||||||||    
T  40754018 aaaaatcaactattacattttc-aatacatttaatacacaacttttcattaaaaacttatcatttaaaatgtttaaagagtg 40753938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 25886209 - 25886288
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcc 111  Q
    |||||||||||||||| |||| |||| |||||||||| ||||||  |||||||| ||||||||||  |||||||||||||    
T  25886209 tcaactattacaattttcaatacatttaatacacaacttttcatataaaacttaccatttaaagtgtttaaagagtgtcc 25886288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 39321054 - 39320971
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtc 110  Q
    |||| |||||||||||||||| ||||| |||||||||||||| ||| || |||||||||  | ||||||| |||||||||||||    
T  39321054 aaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttactaattaaagtgcttaaagagtgtc 39320971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 48488228 - 48488172
Alignment:
Q  50 caatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaaga 105  Q
    ||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||    
T  48488228 caatgcattgaatacataacttttcattaaaaacttatcatttaaagtgcttaaaga 48488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 34117938 - 34117859
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaactttc-attaaaaacttatcatttaaagtacttaaagagtgtcc 111  Q
    ||||||||||| ||||||||||| || | || |||| |||  ||||||||||||||||||||| | ||||||||||||||    
T  34117938 tcaactattacgatttccaatgcgttaattatacaattttttattaaaaacttatcatttaaaatgcttaaagagtgtcc 34117859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 43224159 - 43224072
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgg 114  Q
    |||| |||||| ||||||||||||||| ||  |||||||||| |||||||||||||||   ||||||||| |||||||| || |||||    
T  43224159 aaaagtcaactgttacaatttccaatgtatgtaatacacaacttttcattaaaaacttgctatttaaagtgcttaaagaatgccccgg 43224072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 9719059 - 9718959
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttc 133  Q
    |||| ||||||||| ||||| ||||| |||| |||||| |||  |||||||| |||||||||| |||||||||||| | | | |||||||||||| ||||    
T  9719059 aactgttacaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtgt-ctgaggacactcgttaacatttc 9718961  T
Q  134 cc 135  Q
    ||    
T  9718960 cc 9718959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 27337731 - 27337789
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaactta 85  Q
    ||||||||||||||||| ||| |||| |||| |||||||||| |||||| |||||||||    
T  27337731 aaaaatcaactattacagtttacaatacattaaatacacaacttttcataaaaaactta 27337789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 42936041 - 42936093
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaa 80  Q
    ||||||||||||||||||||| ||||||||| |||||||||  |||||||||||    
T  42936041 aaaaatcaactattacaattt-caatgcatttaatacacaatttttcattaaaa 42936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 44592907 - 44592944
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  44592907 aactattacaattttcaatgtattcaatacacaacttt 44592944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 2864176 - 2864284
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| |||||||||||  |||||  |||||||||    
T  2864176 aaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggg-gcactcgtta 2864274  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  2864275 acatttccct 2864284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 34409769 - 34409874
Alignment:
Q  29 aaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaac 128  Q
    |||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||| |||||||||| | |||||| |||||| | | |||||||||||    
T  34409769 aaaatcaattattataatttccaatgcattcaatacacatttttcattaaaaacttaccatttaaagtgcataaagaatgtcccagaagcactcgttaac 34409868  T
Q  129 gtttcc 134  Q
     |||||    
T  34409869 atttcc 34409874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 44829311 - 44829414
Alignment:
Q  33 tcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgttt 132  Q
    ||||||||||||||||  ||| ||||||||||||||||||   | |||||||| |  ||||||||||||||||||||||||| ||||||||||||  |||    
T  44829311 tcaactattacaatttttaatacattcaatacacaactttttattaaaacttaccgattaaagtacttaaagagtgtcccggaaacactcgttaatattt 44829410  T
Q  133 ccct 136  Q
    ||||    
T  44829411 ccct 44829414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 45640581 - 45640688
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaa 127  Q
    |||| |||| ||||| ||||| ||||||||||| ||||||| |||||| |||||||||  ||||||| | ||||||||||||| |||| |||||||||||    
T  45640581 aaaagtcaattattataattttcaatgcattcattacacaattttcatcaaaaacttactatttaaaatgcttaaagagtgtctcggggacactcgttaa 45640680  T
Q  128 cgtttccc 135  Q
    | ||||||    
T  45640681 catttccc 45640688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 47187893 - 47187784
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    ||||||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||||| ||||  |||||||||||| |||| | ||||||||    
T  47187893 aaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttaccattttaagtgtttaaagagtgtcacggg-atactcgtta 47187795  T
Q  127 acgtttcccta 137  Q
    || ||| ||||    
T  47187794 acattttccta 47187784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 43397087 - 43396978
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||  |||||||||  |||| |||||  ||| |  |||||||||    
T  43397087 aaaagtcaactattataatttccaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgtttaacgagtgcgccgagggcactcgtta 43396988  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  43396987 acatttccct 43396978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 31889196 - 31889278
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac--tttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||| ||||||||||| ||||| |||||||| ||||||||||  |||||||||||||||| |||||||| | |||||||||||    
T  31889196 aaaagtcaactattacgatttctaatgcatttaatacacaactttttcattaaaaacttaccatttaaaatgcttaaagagtg 31889278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 6883200 - 6883120
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagt 107  Q
    |||||||||||||||||||||| |||||||||| |||| ||| ||||||  |||| ||||||||||||||  |||||||||    
T  6883200 aaaaatcaactattacaatttcaaatgcattcattacataacttttcatataaaatttatcatttaaagtgtttaaagagt 6883120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 38748793 - 38748685
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||| ||||| ||||||| |||||||||||| |||||| || ||||||  | ||||||| ||||||||||| || |||  |||||||||    
T  38748793 aaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttactaattaaagtgcttaaagagtg-cctgggggcactcgtta 38748695  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  38748694 acatttccct 38748685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 39150616 - 39150697
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaataca-caactttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||| |||||||||||||||| ||||||||||||||||  || ||||||||||| ||||  | ||||||| |||||||||||    
T  39150616 aaaagtcaactattacaatttacaatgcattcaatacataaattttcattaaaatcttactagttaaagtgcttaaagagtg 39150697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 3982299 - 3982407
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaa 127  Q
    |||| |||||||||| |||||  |||||||| |||| |||||||| | |||||| |||  |||||||||  ||||||||||  ||||  |||||||||||    
T  3982299 aaaagtcaactattataatttataatgcattgaatagacaacttttaataaaaatttactatttaaagtgtttaaagagtgcaccggagacactcgttaa 3982398  T
Q  128 cgtttccct 136  Q
    | |||||||    
T  3982399 catttccct 3982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 38491255 - 38491309
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaa 81  Q
    |||| |||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  38491255 aaaagtcaactattacaatttacaatgcattcaatacacaatttttcattaaaaa 38491309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 44329630 - 44329744
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||||||||| ||||| |||||||||||||||| ||  ||| | |||||||||   |||||||||  ||||||| ||||  || |||||||||||    
T  44329630 aaaagtcaactattataattttcaatgcattcaatacataattttttactaaaaactttctatttaaagtgtttaaagaatgtcgtggaaacactcgtta 44329729  T
Q  127 acgtttccctaaaaa 141  Q
    || ||||||| ||||    
T  44329730 acatttccctcaaaa 44329744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 34232779 - 34232735
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||    
T  34232779 aaaagtcaactattacaattttcaatgctttcaatacacaacttt 34232735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 39156295 - 39156335
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa 68  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  39156295 aaaagtcaactactacaatttccaatgcattcaatacacaa 39156335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 8365537 - 8365595
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaataca-caactttcattaaaaactta 85  Q
    ||||||||||||||||||| | |||||||||||||||| ||  ||||| ||||||||||    
T  8365537 aaaaatcaactattacaatcttcaatgcattcaatacatcatttttcaataaaaactta 8365595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 40460795 - 40460726
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagt 96  Q
    ||||||||| ||||||| ||||||||  |||||||| |||| ||| |||||||||||||  |||||||||    
T  40460795 aaaaatcaattattacagtttccaatttattcaatatacaatttttcattaaaaacttactatttaaagt 40460726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 32562425 - 32562357
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagt 96  Q
    |||| |||||||||||||||| ||||||| | ||||||||| |||   ||||||||||  |||||||||    
T  32562425 aaaattcaactattacaattttcaatgcagtgaatacacaattttttataaaaacttactatttaaagt 32562357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 1841017 - 1841097
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagt 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||  | |||||||||    
T  1841017 aaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaacttatcatttaaaagatttaaagagt 1841097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 32823711 - 32823820
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||  ||||   |||||||||    
T  32823711 aaaagtcaattattacaattttcaatgcattcaatacacaacttttcattaaaaacttgttatttaaagtgcttaaagagtgctccggaggcactcgtta 32823810  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  32823811 acatttccct 32823820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 31855088 - 31855174
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccg 113  Q
    |||| ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||  ||||||||| |||||||||| |||||    
T  31855088 aaaagtcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaagagtatcccg 31855174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 17215755 - 17215674
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||| |||||||||||||||| |||||||||||||| ||||  ||| |||||||||||| |||||||||| |||||||||||    
T  17215755 aaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaagtgcttaaagagtg 17215674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 7421706 - 7421807
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttc-attaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||  | |||||  |||  ||||||||| ||||||||||||| | |||||||||||||    
T  7421706 aaaagtcaaatattacaattttcaatgcatttaatacacaactttttaataaaactttactatttaaagtgcttaaagagtgtcacaggaacactcgtta 7421805  T
Q  127 ac 128  Q
    ||    
T  7421806 ac 7421807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 27778789 - 27778900
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaa 127  Q
    |||| ||||| |||| ||||| ||||||||||||||||||  ||||| |||||| ||| |||||||||| ||||||||||| | ||| ||||| ||||||    
T  27778789 aaaagtcaacgattataattttcaatgcattcaatacacatttttca-taaaaatttaccatttaaagtgcttaaagagtg-ctcggaaacacacgttaa 27778886  T
Q  128 cgtttccctaaaaa 141  Q
    | ||| ||||||||    
T  27778887 cattttcctaaaaa 27778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 28874433 - 28874534
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    ||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||| | ||||||| |  ||||||| | ||||||   |||||||||    
T  28874433 aaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaagaatatcccggaggcactcgtta 28874532  T
Q  127 ac 128  Q
    ||    
T  28874533 ac 28874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 30801785 - 30801876
Alignment:
Q  38 tattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaac 128  Q
    ||||| ||||| |||||||||||||||||||| ||| |||||||||||   ||||||||| |||||||| |||||||||   ||||||||||    
T  30801785 tattataattttcaatgcattcaatacacaacttttaattaaaaacttgctatttaaagtgcttaaagaatgtcccgggggtactcgttaac 30801876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 30739650 - 30739747
Alignment:
Q  45 atttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccctaaaaa 141  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||| || | |||||| ||||  ||  | |||||||||||| ||||| ||||||    
T  30739650 atttccaatgcattcaatacacaatttttcattaaaaatttatcattttaaatgcttaaaaagtggtccatggacactcgttaacatttccttaaaaa 30739747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 24103850 - 24103745
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||||| ||||||||||||||  |||| ||| |||||||||  ||| |||||||| |||| |||||||||| |||||||||||  ||| | |||||||||    
T  24103850 aaaaattaactattacaatttttaatgaatttaatacacaatttttaattaaaaatttattatttaaagta-ttaaagagtgtttcggaatcactcgtta 24103752  T
Q  127 acgtttc 133  Q
    || ||||    
T  24103751 acatttc 24103745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 9301943 - 9302027
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtccc 112  Q
    |||||||||| ||||  |||||||||||||| |||| ||||| ||||| ||||||||| ||||||||| ||| |||||||| ||||    
T  9301943 aaaaatcaacaattattatttccaatgcattgaatatacaacgtttca-taaaaacttgtcatttaaaatacgtaaagagtatccc 9302027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 34552380 - 34552289
Alignment:
Q  43 caatttccaatgca-ttcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttcc 134  Q
    |||||||||||||| || | |||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||||  |||| |||||| |||||    
T  34552380 caatttccaatgcactttattacacaactttcataaaaaagttgtcatttaaagtccttaacgagtg-cccgggggcactagttaacatttcc 34552289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 2864917 - 2865012
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaa-ctttcat-taaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaac 128  Q
    |||||||||||||| ||||||||| |||||||||  ||||||  ||||||||| |||||||| |  |||||||||||| ||||  |||| ||||||    
T  2864917 aactattacaatttacaatgcattaaatacacaatttttcatcaaaaaacttaccatttaaaatgtttaaagagtgtctcgggggcactagttaac 2865012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 1479150 - 1479084
Alignment:
Q  42 acaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    ||||||| ||||||||| ||||||||| |||   |||||| ||| |||||||||| |||||||||||    
T  1479150 acaattttcaatgcattgaatacacaattttacataaaaatttaccatttaaagtgcttaaagagtg 1479084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 2692502 - 2692458
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||| |||||||||||||||||||||| | | |||||||||||||    
T  2692502 aaaagtcaactattacaatttccaatgaagtgaatacacaacttt 2692458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 7465566 - 7465618
Alignment:
Q  83 ttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccc 135  Q
    ||||||| |||||  |||||||||||||||||  |||||||||||| ||||||    
T  7465566 ttatcatataaaggtcttaaagagtgtcccggagacactcgttaacatttccc 7465618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 9762836 - 9762952
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttca-ttaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtt 125  Q
    |||| |||| ||||| |||||| ||| |||||| |||||||| ||||| ||||||| ||| ||||||||||  ||||||||||  || ||| ||||||||    
T  9762836 aaaagtcaattattataatttctaatacattcagtacacaacttttcatttaaaaatttaccatttaaagtgattaaagagtg--cccggagcactcgtt 9762933  T
Q  126 aacgtttccctaaaaataaa 145  Q
    |||  ||||| |||||||||    
T  9762934 aac-attccccaaaaataaa 9762952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 19293518 - 19293414
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttc 133  Q
    |||||||||||||||| ||||| ||||||  |||| |||||| |||||| ||  | ||||||| |||||||||   |||| | |||||| ||||| ||||    
T  19293518 aactattacaatttccgatgcactcaataaccaacttttcataaaaaacctactaattaaagtgcttaaagagatccccgaggacactcattaacatttc 19293419  T
Q  134 cctaa 138  Q
    |||||    
T  19293418 cctaa 19293414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 20313 - 20238
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtgtc 110  Q
    ||||||||||||||| |||||||| |||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  20313 aactattacaatttcaaatgcattaaatacacaacttttcataaaaacttatcatttaaagtgcttaaagagtgtc 20238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 62597 - 62491
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttc-attaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| ||||||||||| |||| |||||||||||||||| || |||  ||||||||||||  ||||||||| ||||||||||  |||||  ||||||||||    
T  62597 aaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttactatttaaagtgcttaaagagtaccccggagacactcgtta 62498  T
Q  127 acgtttc 133  Q
    || ||||    
T  62497 acatttc 62491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 1099 - 1200
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    ||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||| | ||||||| |  ||||||| | ||||||   |||||||||    
T  1099 aaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaagaatatcccggaggcactcgtta 1198  T
Q  127 ac 128  Q
    ||    
T  1199 ac 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 42846078 - 42845974
Alignment:
Q  28 aaaaatcaactattacaatttccaat-gcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtt 125  Q
    |||| ||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||     |||||||||||||||  |||| ||||| ||    
T  42846078 aaaagtcaactatttcaattttcaattgcattcaatacacaacttttcattaaaaacttatcatt-----tacttaaagagtgtcatgggagcactcctt 42845984  T
Q  126 aacgtttccc 135  Q
    ||| ||||||    
T  42845983 aacatttccc 42845974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 40673468 - 40673543
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaa 102  Q
    |||| ||||||||||||||||| |||  ||||||||||| || |||| |||||||||||||||||||||| |||||    
T  40673468 aaaattcaactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaagtgcttaa 40673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 12086826 - 12086718
Alignment:
Q  37 ctattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttccc 135  Q
    |||||| ||||| || |||||||||||||||  ||| |||||||||||||  ||||  |||||||||| ||||||||| |  ||||||||||| ||||||    
T  12086826 ctattataattttcagtgcattcaatacacattttttcattaaaaacttactatttcgagtacttaaatagtgtcccgagggcactcgttaacatttccc 12086727  T
Q  136 taaaaataa 144  Q
      |||||||    
T  12086726 ataaaataa 12086718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 16663011 - 16663079
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagt 96  Q
    |||| ||||||||||||||| |||||||| | |||||||||||||   ||||||||||| |||||||||    
T  16663011 aaaagtcaactattacaattaccaatgcagtgaatacacaactttttataaaaacttattatttaaagt 16663079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 24791530 - 24791616
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatca---tttaaagtacttaaagagtgtc 110  Q
    |||| |||||||||||||||| ||||| |||||||||| |||||| |||||||||||||  |   ||||||||| ||||||||||||    
T  24791530 aaaagtcaactattacaattttcaatgtattcaatacataacttttcattaaaaacttagtactatttaaagtatttaaagagtgtc 24791616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 41309880 - 41309815
Alignment:
Q  70 tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaacgtttcccta 137  Q
    |||||||||||||||||||||||||||  ||||||||||  || ||||||||||||||  ||||||||    
T  41309880 tttcattaaaaacttatcatttaaagtgtttaaagagtg--cccggaacactcgttaatatttcccta 41309815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 51351321 - 51351396
Alignment:
Q  38 tattacaatttccaatgcattcaatacacaacttt-cattaaaaacttatcatttaaagtacttaaagagtgtccc 112  Q
    ||||| |||||||||| |||| ||||||||| ||| |||||||||||||   |||||||| |||||||||||||||    
T  51351321 tattataatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaaagagtgtccc 51351396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 48180243 - 48180134
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtgtcccgggaacactcgtta 126  Q
    |||| ||||||||||||||||||||||||||   ||| |||| |||||| |||||||||  |||||||||  | ||||||||| ||||  | | ||||||    
T  48180243 aaaagtcaactattacaatttccaatgcattggttacccaacatttcataaaaaacttactatttaaagtgataaaagagtgttccggagatattcgtta 48180144  T
Q  127 acgtttccct 136  Q
    || |||||||    
T  48180143 acatttccct 48180134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 29083965 - 29083865
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaac-tttcattaaaaactta-tcatttaaagtacttaaagagtgtcccgggaacactcgttaacgttt 132  Q
    ||||||||||||||  |||||||| |||||||||| ||||| |||||||||| |  |||||||| |||||||||| ||| ||   ||||||||||| |||    
T  29083965 aactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattttaaagtgcttaaagagtatcctggaggcactcgttaacattt 29083866  T
Q  133 c 133  Q
    |    
T  29083865 c 29083865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 7278220 - 7278157
Alignment:
Q  45 atttccaatgcattcaatacacaactttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||||||||||||||||| ||||| ||||  ||||||||||  ||||||||| ||||| |||||    
T  7278220 atttccaatgcattcaatgcacaagtttcgataaaaacttactatttaaagttcttaaggagtg 7278157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 26900095 - 26900014
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaacttatcatttaaagtacttaaagagtg 108  Q
    |||| |||||||||||||||| ||||||||| | |||| ||| ||||||  |||| ||| ||||||||||  ||||||||||    
T  26900095 aaaagtcaactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaagtgtttaaagagtg 26900014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 52249367 - 52249460
Alignment:
Q  35 aactattacaatttccaatgcattcaatacacaactttcattaaa-aacttatcatttaaagtacttaaagagtgtcccgggaacactcgttaa 127  Q
    |||||||||||| || |||  |||||||| ||||||||  ||||| ||||||| | ||||||| |||||| ||||  |||||| ||||||||||    
T  52249367 aactattacaatctctaatatattcaatatacaactttttttaaataacttattaattaaagtgcttaaaaagtgctccgggagcactcgttaa 52249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 52309272 - 52309321
Alignment:
Q  98 cttaaagagtgtcccgggaacactcgttaacgtttccctaaaaataaata 147  Q
    ||||||||||| |||||| |||||||||||| ||||||| |||| |||||    
T  52309272 cttaaagagtgccccggggacactcgttaacatttccctgaaaaaaaata 52309321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 45988297 - 45988254
Alignment:
Q  28 aaaaatcaactattacaatttccaatgcattcaatacacaacttt 72  Q
    |||||||||||||||||||||| |||||||| || ||||||||||    
T  45988297 aaaaatcaactattacaatttctaatgcatt-aacacacaacttt 45988254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 52638224 - 52638172
Alignment:
Q  34 caactattacaatttccaatgcattcaatacacaactttcattaaaaacttat 86  Q
    ||||||||||||||||||||||| | ||||||||| |||   |||||||||||    
T  52638224 caactattacaatttccaatgcagtgaatacacaattttttataaaaacttat 52638172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 1770 - 1732
Alignment:
Q  34 caactattacaatttccaatgcattcaatacacaacttt 72  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  1770 caactattacaatttccaatgcattgaatgcacaacttt 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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