View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5041-Insertion-11 (Length: 348)
Name: NF5041-Insertion-11
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5041-Insertion-11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 44073817 - 44074164
Alignment:
| Q |
8 |
gcaaaaatgttaaaaagtttaagacnnnnnnnccaatctaactatggatattgtgcacgctgtacatagcctgcaagaacacattgatacgtgtcctatc |
107 |
Q |
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| T |
44073817 |
gcaaaaatgttaaaaagtttaagacaaaaaaaccaatctaactatggatattgtgcacgctgtacatagcctgcaagaacacattgatacgtgtcctatc |
44073916 |
T |
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| Q |
108 |
taagagtgtcgtgccgaccatgcatcactttacttcttttctaaagtttccaagtataatttgataatcttataggatttaattcatatacactactata |
207 |
Q |
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| T |
44073917 |
taagagtgtcgtgccgaccatgcatcactttacttcttttctaaagtttccaagtataatttgataatcttataggatttaattcatatacactactata |
44074016 |
T |
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| Q |
208 |
aaatgtaaatattttttacactctcaattaatcaaaaccgcagattcattacaatcaacaaggcaaaagtgaac---ttataagttaagcagaaacacac |
304 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44074017 |
aaatgtaaatatattttacactctcaattaatcaaaaccgcagattcattacaatcaacaaggcaaaagtgaacttattataagttaagcagaaacacac |
44074116 |
T |
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| Q |
305 |
tc----gtaatgataatacatcaaaagagactattatcacacttcata |
348 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44074117 |
tcgttagtaatgataatacatcaaaagagactattatcacacttcata |
44074164 |
T |
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