View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5041-Insertion-12 (Length: 309)
Name: NF5041-Insertion-12
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5041-Insertion-12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 46321916 - 46321615
Alignment:
| Q |
8 |
acatatacgtccaaaaccggcacaattttatcatcaagtaataacaaacatttcctagtgagattaagaccctattgatgcctaccatataactactact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46321916 |
acatatacgtccaaaaccggcacaattttatcatcaagtaataacaaacatttcctagtgagattaagaccctattgatgcctaccatataactactact |
46321817 |
T |
|
| Q |
108 |
tcaatacaaactcgttttggggacaagatagagcacaaattttggattatcgatccactacactcgtagaagttagtcctagtaccacacattgttttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46321816 |
tcaatacaaactcgttttggggacaagatagagcacaaattttggattattaatccactacactcgtagaagttagtcctagtaccacacattgttttga |
46321717 |
T |
|
| Q |
208 |
gagggagaactcatactcataattaattatgtatatggagatgtcaacaaaatatagtatatccaatttcattagagtttgttagcgaaactaaaaagtg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46321716 |
gagggagaactcatactcataattaattatgtatatggagatgtcaaaaaaatatagtatatccaatttcattatagtttgttagcgaaactaaaaagtg |
46321617 |
T |
|
| Q |
308 |
aa |
309 |
Q |
| |
|
|| |
|
|
| T |
46321616 |
aa |
46321615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University