View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5041-Insertion-3 (Length: 1036)
Name: NF5041-Insertion-3
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5041-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 944; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 944; E-Value: 0
Query Start/End: Original strand, 8 - 1036
Target Start/End: Complemental strand, 18688396 - 18687370
Alignment:
| Q |
8 |
gctagttcacagaatctgtgtttacttgagcaggaacagattgcgtttggtcttcaacaaggccagttactgcatcaaacatttcaccaggtttgttttg |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18688396 |
gctagttcacagaatctgtgttcacttgagcaggaacagattgcgtttggtcttcaacaaggccagttactgcatcaaacatttcaccaggtttgttttg |
18688297 |
T |
|
| Q |
108 |
agaaactaatacttttcgccagaaggtggatccaatagctcattcaccgaatttgagttacttgagcaggaacagattgtgtctgctcttcaacaacaag |
207 |
Q |
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| T |
18688296 |
agaaactaatacttttcgccagaaggtggatccaatagctcattcaccgagtttgagttacttgagcaggaacagattgtgtctgctcttcagcaacaag |
18688197 |
T |
|
| Q |
208 |
gccagttactgcatcactcatttctccaggttcattttgaacatgttgaggacatctgttttctgatttatagtcagatacgaaaaacagggagttgcac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
18688196 |
gccagttactgcatcactcatttctccaggttcattttgaacatgttgaggacatctgttttctgatttatagtcagat-cgaaaaacagggagttgttc |
18688098 |
T |
|
| Q |
308 |
agaggtactttgttgaatacatgaaccttctaaagtctggcaagaattttcttagaaaggatgaggtagttcaggcagttgaataacaaaattttccatc |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18688097 |
agaggtactttgttgaatacatgaaccttctaaagtctggcaagaattt-cttagaaaggatgaggtagttcaggcagttgaataacaaaatttcccatc |
18687999 |
T |
|
| Q |
408 |
atattcacagaaacttttgatttgaattttcatcaataccagaattggtcaacacggtaccaagcattctttgttcgttgtctaaacaacactcagagcc |
507 |
Q |
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| T |
18687998 |
atattcacagaaactta--atttgaattttcatcaataccagaattggtcaacacggtaccaagcattctttgttcgttgtctaaacaacactcagagcc |
18687901 |
T |
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| Q |
508 |
aacctgagctgttttttcagacaaataacattgttcagttcccatcttctcaatggaacaactccatggtcggtcaaattttcagttgaactaatcattg |
607 |
Q |
| |
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| T |
18687900 |
aacctgagctgttttttcagacaaataacattgttcagttcccatcttctcaatggaacaactccatggtcggtcgaattttcagttgaactaatcattg |
18687801 |
T |
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| Q |
608 |
gtgtaaggaaacacacttcaccacagctcccaccaccatagccagaaagtaagtccaataactacaaagaaaacaatcaatctctctcagcttttatgct |
707 |
Q |
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| T |
18687800 |
gtctaaggaaacacacttcaccacagctcccaccaccatagccagaaagtaagtccaataactacaaagaaaacaatcaatctctctcagcttttatgct |
18687701 |
T |
|
| Q |
708 |
ttcatgcttgacattaattactacatgtgggagtggcaaacaagtattaaaataaatatacttagctaaaagtactgcaaaaaccttcaatgacacgact |
807 |
Q |
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| T |
18687700 |
ttcatgcttgacattaattactacatgtgggagtggcaaacaagtattaaaataaatatacttagctaaaagtactgcaaaaaccttcactgacacgact |
18687601 |
T |
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| Q |
808 |
aattttaaagctcaatgaacatcccaacaaggcgtgcttttggttgaatttaacgaaacaatgagcaaagaaacaaccagtaacagagtaagc-aaagag |
906 |
Q |
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| T |
18687600 |
aattttaaagctcaatgaacatcccaacaaggcgtgcttttggttgaatttaacgaaacaatgaacaaagaaacaaccagtaacagagtaagcaaaagag |
18687501 |
T |
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| Q |
907 |
aatttggacatatgacaatgaaggcaattcaaaacaccgaattaacaaatgagttgcagttgcacacagattacaaaatttcca-tttttactgtgccaa |
1005 |
Q |
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| T |
18687500 |
aatttggacatatgacaatgaaggcaattcaaaacaccgaattaacaaatgagttgcagttgcacacagattacaaaatttccattttttactgtgccaa |
18687401 |
T |
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| Q |
1006 |
gttaattccaaagtaaaattcagtgcccaga |
1036 |
Q |
| |
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| T |
18687400 |
gttaattccaaagtaaaattcagtgcccaga |
18687370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 48448081 - 48447861
Alignment:
| Q |
22 |
tctgtgtttacttgagcaggaacagattgcgtttggtcttcaacaaggccagttactgcatcaaacatttcaccaggtttgttttgagaaactaatactt |
121 |
Q |
| |
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||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||| || |
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| T |
48448081 |
tctgttttcacttgagcaggaacagattgtgtttggtcttcaacaaggccagtaactgcatcactagtttcaccaggttcgttttgag-aactaatattt |
48447983 |
T |
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| Q |
122 |
ttcg--------ccagaaggtggatccaatagctcattcaccgaatttgagtt-acttgagcaggaacagattgtgtctgctcttcaacaacaaggccag |
212 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | ||||| || |||| |||||||| || |
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| T |
48447982 |
ttcgcaacatctccagaaggtggatccaatagctcattcacagaatttgatttcacttgaacaggaacgggttgtggttgttctt---caacaagggtag |
48447886 |
T |
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| Q |
213 |
ttactgcatcactcatttctccagg |
237 |
Q |
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|||||||||| |||||||||||||| |
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| T |
48447885 |
ttactgcatctctcatttctccagg |
48447861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 379 - 559
Target Start/End: Complemental strand, 48447864 - 48447689
Alignment:
| Q |
379 |
caggcagttgaataacaaaattttccatcatattcacagaaacttttgatttgaattttcatcaataccagaattggtcaacacggtaccaagcattctt |
478 |
Q |
| |
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||||||||||||||||| |||| || |||||||||| |||| || |||||| |||||||| ||| |||||| ||| | || |||||||||| ||| |
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| T |
48447864 |
caggcagttgaataacagaattctcagtcatattcaccgaaatatt--atttgatttttcatcgataacagaatcggttactacagtaccaagcacactt |
48447767 |
T |
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| Q |
479 |
tgttcgttgtctaaacaacactcagagccaacctgagctgttttttcagacaaataacattgttcagttcccatcttctca |
559 |
Q |
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| T |
48447766 |
tgttctttgtctaaacat---tcagagccaacctgagttgttttttcagacatgtcacgttgttcagttcctatcttctca |
48447689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 48448072 - 48447995
Alignment:
| Q |
167 |
acttgagcaggaacagattgtgtctgctcttcaacaacaaggccagttactgcatcactcatttctccaggttcattttga |
247 |
Q |
| |
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| T |
48448072 |
acttgagcaggaacagattgtgtttggtctt---caacaaggccagtaactgcatcactagtttcaccaggttcgttttga |
48447995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 18718548 - 18718408
Alignment:
| Q |
31 |
acttgagcaggaacagattgcgtttggtcttcaacaaggccagttactgcatcaaacatttcaccaggtttgttttgagaaactaatacttttcg----- |
125 |
Q |
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||||||||||||||| |||| |||||||||| |||||||||||| ||||||||| | |||||||| || ||||||| |||||||| |||||| |
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| T |
18718548 |
acttgagcaggaacaaattgtgtttggtctttaacaaggccagtaactgcatcactcgtttcaccatattcattttgag-aactaatatttttcgcaaca |
18718450 |
T |
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| Q |
126 |
---ccagaaggtggatccaatagctcattcaccgaatttgag |
164 |
Q |
| |
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| T |
18718449 |
tctccagaaggtggatccaatagctgattcacagaatttgag |
18718408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 18718548 - 18718471
Alignment:
| Q |
167 |
acttgagcaggaacagattgtgtctgctcttcaacaacaaggccagttactgcatcactcatttctccaggttcattttga |
247 |
Q |
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||||||||||||||| ||||||| || |||| ||||| ||||||| |||||||||||| |||| ||| |||||||||| |
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| T |
18718548 |
acttgagcaggaacaaattgtgtttggtctttaacaa---ggccagtaactgcatcactcgtttcaccatattcattttga |
18718471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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