View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5041-Insertion-4 (Length: 923)
Name: NF5041-Insertion-4
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5041-Insertion-4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 60 - 923
Target Start/End: Original strand, 27046649 - 27047522
Alignment:
| Q |
60 |
attttgtgcttgtcaagtgattttgcttagaagaattgttcttccgcttgggcataagcaggcgaattgcaccaacactaattgcactgttatttactgt |
159 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046649 |
attttgtgcttgacaagtgattttgcttagaagaattgttcttccgctttggcataagcaggtgaattgcaccaacactaattgcactgttatttactgt |
27046748 |
T |
|
| Q |
160 |
gataacaactcatctattaagttatcaaagaaccctgtgatgcatggtcgaaacaagcacattgatgttaggtaccacttgagatatctcaccaaagatg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27046749 |
gataacaactcatctattaagttatcaaagaaccctgtgatgcatactcgaaacaagcacgttgatgttaggtaccacttgagatatctcacgaaagatg |
27046848 |
T |
|
| Q |
260 |
gtatagttcaattggaacattgtagcacacaagatcagttagctgatataatgactaaacctttcaagttggaaacattttgcaaactaagagataactt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046849 |
gtatagttcaattggaacattgtagcacacaagatcagttagctgatataatgactaaacctttcaagttggaaacattttgcaaactaagagataactt |
27046948 |
T |
|
| Q |
360 |
aggcatttgtgacttatctaatgtaaaatgatcgtataattgctcgatttaaaggaagatatgttaggaattagttttactaagcattgtattgtattac |
459 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046949 |
aggcatttgtgacttgtctaatgtaaaatgattgtataattgctcgatttaagggaagatatgttaggaattagttttactaagcattgtattgtattaa |
27047048 |
T |
|
| Q |
460 |
aactattttgtactattgacctagataaggcaatcactagtaaatgaatatagtagcaaaacattttaccttatatcttttacttaacaaggacatcgac |
559 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
27047049 |
aactattttgtactattgacctatataaggcactcactagtaaatgaatatagtagcaaagcattttaccttacatcttttatttaataaggacatcgac |
27047148 |
T |
|
| Q |
560 |
ttattaaagatccatattagaggaagnnnnnnntggatacatatttgttaccgataattatataagaactctttcttcagcaaataacaggtcccgcgat |
659 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27047149 |
ttattaaagatccatattggagaaagaaaaaaatgggtacctatttgttaccgacaactatataagaactctttcttcagcaaataacagatcccgcgat |
27047248 |
T |
|
| Q |
660 |
aaaaatagggagnnnnnnnnngtaaataaagttggtcccaccatcttaagttctttgttgaagagtttatagtcaaagg-----------gagaacaaag |
748 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |||| ||||| |
|
|
| T |
27047249 |
aaaattagggag-aaaaaaaagtaaataaagttagtcccaccatcttaagttctttgtttgagagtttatagttaaagggagttagacttgagagcaaag |
27047347 |
T |
|
| Q |
749 |
aaaggagttaagggaaagaaaattgttaaaagtctcaataaattgattcctcatttcgttgaaaaaatacatctgcttcttttcttctaaagagtccaaa |
848 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
27047348 |
aaaggagttaagggaaagaaaattgttaaaagtctcgataaattgattcctcatttcgttgaaaaaatacatctacttcttttctttcaaagagtccaaa |
27047447 |
T |
|
| Q |
849 |
cacacaataaccaaatcagatataataatgtcggaatagctcttgaaaaaccacctaaataaccaaattatacaa |
923 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
27047448 |
tatacaataatcaaatcagatataataatgtcggaatagctcttgaaacaccacctaaatagccaaattatacaa |
27047522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 609578 - 609633
Alignment:
| Q |
151 |
atttactgtgataacaactcatctattaagttatcaaagaaccctgtgatgcatgg |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||| | |||||||| |
|
|
| T |
609578 |
atttattgtgataacaactcatctattaagttgtcaaagaatcctattatgcatgg |
609633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University