View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5041-Insertion-6 (Length: 673)

Name: NF5041-Insertion-6
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5041-Insertion-6
NF5041-Insertion-6
[»] chr5 (2 HSPs)
chr5 (526-673)||(6239838-6239986)
chr5 (29-206)||(6239988-6240175)
[»] chr7 (1 HSPs)
chr7 (591-666)||(45854377-45854453)
[»] chr1 (4 HSPs)
chr1 (591-673)||(45814065-45814148)
chr1 (591-666)||(27068011-27068087)
chr1 (591-666)||(38158059-38158135)
chr1 (590-673)||(41806074-41806158)
[»] chr8 (1 HSPs)
chr8 (591-666)||(36481274-36481350)
[»] chr4 (1 HSPs)
chr4 (591-629)||(2473735-2473773)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 526 - 673
Target Start/End: Complemental strand, 6239986 - 6239838
Alignment:
Q  526 agggaaaaatgattcattattgaattattacattaaatttgaacaaaatctttcttttgga-cgaatatcaagtgatcttcgacaccactttatttagtt 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||| ||||    
T  6239986 agggaaaaatgattcattattgaattattacattaaatttgaacaaaatctttctttttgaacgcatatcaggtgatcttcgacaccactttattcagtt 6239887  T
Q  625 caccagatggtggctacacctcatttttcacaccactaccttcatatta 673  Q
    || || ||||||||||  |||||||||| ||||||||||||||||||||    
T  6239886 catcatatggtggctatgcctcattttttacaccactaccttcatatta 6239838  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 6240175 - 6239988
Alignment:
Q  29 atttctaaaaagaagaagaaagtactaaaccatttttcagcaaatatannnnnnnnctttt-gcatccaagtactatatcatggaacacaag-------- 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||          |||| |||||||||||||||||||||||||||||             
T  6240175 atttctaaaaagaagaagaaagtactaagccatttttcagcaaatatctttattttttttttgcatccaagtactatatcatggaacacaacttacacaa 6240076  T
Q  120 -caacattcaaagtttcaattacaattaggtgaataaagtttgacaacatgtatgacaaagtaaaataagtcatatccaataaaccta 206  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||    
T  6240075 tcaacatttaaagtttcaattacaattaggtgaataaagtttgacaacatatatgataaagtaaaataagccacatccaataaaccta 6239988  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 666
Target Start/End: Complemental strand, 45854453 - 45854377
Alignment:
Q  591 tatcaagtgatcttcgacaccactttatttagttcacc-agatggtggctacacctcatttttcacaccactacctt 666  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||| |||||  ||||| ||||||||||||||||||    
T  45854453 tatcaggtgatcttcgacaccactttatttagtttaccaagatggcggctatgcctcacttttcacaccactacctt 45854377  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 673
Target Start/End: Complemental strand, 45814148 - 45814065
Alignment:
Q  591 tatcaagtgatcttcgacaccactttatttagttcacca-gatggtggctacacctcatttttcacaccactaccttcatatta 673  Q
    ||||| ||||||||||||| ||||||||| ||||||||| | ||| |||||  ||||| |||||||||||||||||||||||||    
T  45814148 tatcaggtgatcttcgacatcactttattcagttcaccaagctggcggctatgcctcacttttcacaccactaccttcatatta 45814065  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 27068011 - 27068087
Alignment:
Q  591 tatcaagtgatcttcgacaccactttatttagttcacc-agatggtggctacacctcatttttcacaccactacctt 666  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| |  |||||  ||||| ||| ||||||||||||||    
T  27068011 tatcaggtgatcttcgacaccactttattcagttcaccaagacgacggctatgcctcactttacacaccactacctt 27068087  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 38158059 - 38158135
Alignment:
Q  591 tatcaagtgatcttcgacaccactttatttagttcacc-agatggtggctacacctcatttttcacaccactacctt 666  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||| |||||  ||||| ||| | ||||| ||||||    
T  38158059 tatcaggtgatcttcgacaccactttattcagttcaccaagatggcggctatgcctcactttactcaccattacctt 38158135  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 673
Target Start/End: Original strand, 41806074 - 41806158
Alignment:
Q  590 atatcaagtgatcttcgacaccactttatttagttcacc-agatggtggctacacctcatttttcacaccactaccttcatatta 673  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||| | | |  ||||| ||||||||| | | |||||||||||    
T  41806074 atatcatgtgatcttcgacaccactttattcagttcaccaagatggcgacaatgcctcacttttcacactatttccttcatatta 41806158  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 36481274 - 36481350
Alignment:
Q  591 tatcaagtgatcttcgacaccactttatttagttcacc-agatggtggctacacctcatttttcacaccactacctt 666  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||| || ||  ||||| ||| ||||||||||||||    
T  36481274 tatcaggtgatcttcgacaccactttattcagttcaccaagatggcgggtatgcctcactttacacaccactacctt 36481350  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 629
Target Start/End: Complemental strand, 2473773 - 2473735
Alignment:
Q  591 tatcaagtgatcttcgacaccactttatttagttcacca 629  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  2473773 tatcaggtgatcttcgacaccactttattcagttcacca 2473735  T

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