View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5041-Insertion-7 (Length: 615)
Name: NF5041-Insertion-7
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5041-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Original strand, 8586388 - 8586977
Alignment:
| Q |
8 |
atatgtacactctggctctgcctattcacaataggcattactaataaccacgtaatctgtttgcacctgagtggaaattggaaataccggaacattggac |
107 |
Q |
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| T |
8586388 |
atatgtacactctggctctgcctattcacaataggcattactaataaccatgtagtctgtttgcacctgagtggaaattggaaataccggaacattggac |
8586487 |
T |
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| Q |
108 |
atggatgtataaccggtgcattgctggtcaaacgggatatacagatgaatttttgacaggcctcagagtttcttgattttgcttgtcaacaaccacgata |
207 |
Q |
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| T |
8586488 |
atggatgtataaccggtgcattgctggtcgaacgggatatacaaatgaatttttgacaggcctcaga---------ttttgcttgtcaacaaccacgata |
8586578 |
T |
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| Q |
208 |
tttcttggtttttacttcattcctctct--tgctctccgaacttctatcctgaataacagtt-tgtttaaatttatcaaggccttattatatctagtttt |
304 |
Q |
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| T |
8586579 |
tttcttggtttttacttctttcctctctcttgctcgccgaacttctatcccgaataacggttctgtttaaatttatca-ggacttattatatctagtttt |
8586677 |
T |
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| Q |
305 |
gcctttcacatttgtcctcactgcccttggaatagctatggatgttaacttgagcaatgcatctctagttttcatctctgtgacannnnnnnnnatcaat |
404 |
Q |
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| T |
8586678 |
gcctttcacatttgtcctcactgcccttggaatagctatggatgttaacttgagcaatgcatctctagttttcatctctgtgacatttttttt-atcaat |
8586776 |
T |
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| Q |
405 |
ctctgtcacatttgttacaatagtttggggcattttcatttatttaattactttttcttgtattgttacatcagaatcggattctacattttcaagctaa |
504 |
Q |
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| T |
8586777 |
ctctgtcacatttgctacaatagtttggggcatcttcatttatttaattactttttcttgtattgttacatcagaatcggattctacattttcaagctaa |
8586876 |
T |
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| Q |
505 |
ctaactatcctccactccttatttacctttcctttttattttgcagtgtcaatctacaactccaattgttcctgtcttgtttgattttgctttcaggtga |
604 |
Q |
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| T |
8586877 |
ctaactatcctccactccttatttacctttcc-ttttattttgcagtgtcaatctacagctccaattgttcctgtcttgtttgattttgctttcaggtga |
8586975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 5362432 - 5362515
Alignment:
| Q |
302 |
tttgcctttcacatttgtcctcactgcccttggaatagctatggatgttaacttgagcaatgcatctctagttttcatctctgt |
385 |
Q |
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| T |
5362432 |
tttgcctttcacagttgtcccgactgctcttggaacggctatggatgttaacttgagcaatgcatctctagttttcatctctgt |
5362515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 8572933 - 8573078
Alignment:
| Q |
67 |
tttgcacctgagtggaaattggaaataccggaacattggacatggatgtataaccggtgcattgctggtcaaacgggatatacagatgaatttttgacag |
166 |
Q |
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| T |
8572933 |
tttgcagctgagaggaaaatggacgtgccagaacatcgtacatggatgtataataggcgcattactggtcgaaagggatttacagctgaatttttgcaag |
8573032 |
T |
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| Q |
167 |
gcctca--gagtttcttgattttgcttgtcaacaaccacgatattt |
210 |
Q |
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| T |
8573033 |
gcctcaaagagtttcttgattttgcttgtcaacaaccacaatattt |
8573078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 503 - 615
Target Start/End: Original strand, 5362634 - 5362746
Alignment:
| Q |
503 |
aactaactatcct-ccactccttatttacctttcctttttattttgcagtgtcaatctacaactccaattgttcctgtcttgtttgattttgctttcagg |
601 |
Q |
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| T |
5362634 |
aactaactatccttcccctccttatttacttttcctttt-attttgcagtgtaaatctgctgctccaatctttctcctcttgtttgcttttgctttccgg |
5362732 |
T |
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| Q |
602 |
tgagtttcctttca |
615 |
Q |
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| T |
5362733 |
tgagtttcctttca |
5362746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 8579578 - 8579656
Alignment:
| Q |
127 |
attgctggtcaaacgggatatacagatgaatttttgacaggcctc--agagtttcttgattttgcttgtcaacaaccac |
203 |
Q |
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| T |
8579578 |
attggtggtcaaaggcgatatacagttgaatttttgcaaagccttgaagagtttcttgattttgcttgtcaacaaccac |
8579656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 8602947 - 8603002
Alignment:
| Q |
157 |
tttttgacaggcctca--gagtttcttgattttgcttgtcaacaaccacgatattt |
210 |
Q |
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| T |
8602947 |
tttttgaaaggcctcaaagagtttcttgaatttgcttgtcaacaaccacaatattt |
8603002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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