View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5041-Insertion-8 (Length: 474)

Name: NF5041-Insertion-8
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5041-Insertion-8
NF5041-Insertion-8
[»] chr6 (5 HSPs)
chr6 (8-373)||(6590120-6590485)
chr6 (141-220)||(6405640-6405719)
chr6 (341-381)||(6411711-6411751)
chr6 (116-168)||(6603751-6603803)
chr6 (355-432)||(392395-392472)
[»] chr8 (2 HSPs)
chr8 (154-247)||(36768206-36768299)
chr8 (343-381)||(36768829-36768867)
[»] chr4 (1 HSPs)
chr4 (335-398)||(21835702-21835766)
[»] chr5 (3 HSPs)
chr5 (140-244)||(28524549-28524653)
chr5 (285-375)||(20480395-20480488)
chr5 (285-314)||(28524451-28524480)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 373
Target Start/End: Original strand, 6590120 - 6590485
Alignment:
Q  8 tgatatgctgcatgttttttagtgatctgctgtctaggtttactgtgtgattctctcttgatgtagtttcaatttatggggctgctgcatgtataaaatt 107  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6590120 tgatatgctgcatgttttttaatgatctgctgtcttggtttactgtgtgattctctcttgatgtagtttcaatttatggggctgctgcatgtataaaatt 6590219  T
Q  108 gtatttttgaatccagatgggtttgtgtccttctaataacacatttaatctaggtatatatgaataagatcctaagtcattatgtttccatcatcgaagt 207  Q
    |  |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6590220 gactttttgaaaccagatgggtttgtgtccttctaattacacatttaatctaggtatatatgaataagatcctaagtcattatgtttccatcatcgaagt 6590319  T
Q  208 tctgatatctagctgttgggtctttatttttgcggttgtgtttgttaattaggtattgagtgacattcaaaataatgttgattcattttgtgtatgctac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6590320 tctgatatctagctgttgggtctttatttttgcggttgtgtttgttaattaggtattgagtgacattcgaaataatgttgattcattttgtgtatgctac 6590419  T
Q  308 aggttaccggagattgagggaagattacagtttaaagaaatttaagcaagtttggaattaaagaaa 373  Q
    |||||||| |||||  |||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  6590420 aggttaccagagatcaagggaagattacagttcaaagaaatttaagcatgtttggaattaaagaaa 6590485  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 6405719 - 6405640
Alignment:
Q  141 taataacacatttaatctaggtatatatgaataagatcctaagtcattatgtttccatcatcgaagttctgatatctagc 220  Q
    |||| ||||| ||| | |||||||||| ||||| ||||| |||||||||||||||||||||||||||| || ||||||||    
T  6405719 taatcacacaattagtttaggtatatacgaataggatccaaagtcattatgtttccatcatcgaagttatggtatctagc 6405640  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 6411751 - 6411711
Alignment:
Q  341 aaagaaatttaagcaagtttggaattaaagaaatagctaga 381  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  6411751 aaagaaatataagcaagtttggaattaaagaaatagctaga 6411711  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 6603751 - 6603803
Alignment:
Q  116 gaatccagatgggtttgtgtccttctaataacacatttaatctaggtatatat 168  Q
    ||||| || ||||||||||||||||||| |||||||||||| |||||||||||    
T  6603751 gaatctaggtgggtttgtgtccttctaacaacacatttaatttaggtatatat 6603803  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 432
Target Start/End: Complemental strand, 392472 - 392395
Alignment:
Q  355 aagtttggaattaaagaaatagctagagtggaaagactccaaagaaaaattgagggcccaggaatttgctttattttg 432  Q
    ||||||| ||||||||||||||||||| |||||||  ||||||| | || |||| ||| | |||||| ||||||||||    
T  392472 aagtttgaaattaaagaaatagctagaatggaaaggttccaaagcacaactgagtgcctaagaatttcctttattttg 392395  T

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Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 36768206 - 36768299
Alignment:
Q  154 aatctaggtatatatgaataagatcctaagtcattatgtttccatcatcgaagttctgatatctagctgttgggtctttatttttgcggttgtg 247  Q
    ||||||| ||| |||||||| ||||| ||||||||||||| |||||||| ||||| ||  |||||||||||||||||||||||||| |||||||    
T  36768206 aatctagatatgtatgaataggatccaaagtcattatgttaccatcatcaaagttttgggatctagctgttgggtctttatttttgtggttgtg 36768299  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 36768829 - 36768867
Alignment:
Q  343 agaaatttaagcaagtttggaattaaagaaatagctaga 381  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  36768829 agaaatttcggcaagtttggaattaaagaaatagctaga 36768867  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 21835702 - 21835766
Alignment:
Q  335 cagtttaaagaaatttaagcaagtttggaattaaagaaatagctag-agtggaaagactccaaag 398  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  21835702 cagttcaaagaaatttaagcaagtttggaattaaagaaatagctagaactggaaagattccaaag 21835766  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 28524653 - 28524549
Alignment:
Q  140 ctaataacacatttaatctaggtatatatgaataagatcctaagtcattatgtttccatcatcgaagttctgatatctagctgttgggtctttatttttg 239  Q
    ||||||| | |||| || ||||||||||||| ||  |||| ||||||| |||||||||||||| |||||| | | |||||| |   ||||||||| ||||    
T  28524653 ctaataaaatattttatttaggtatatatgattagcatccaaagtcatcatgtttccatcatctaagttccggtgtctagccgcgcggtctttatatttg 28524554  T
Q  240 cggtt 244  Q
    |||||    
T  28524553 cggtt 28524549  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 20480395 - 20480488
Alignment:
Q  285 ttgattcattttgtgtatgctacaggttaccggagattgagggaagat--ta-cagtttaaagaaatttaagcaagtttggaattaaagaaata 375  Q
    |||||||||||||| |||||||||||||||  |||||  | | ||| |  || |||||||||||||||||||||||| ||| ||||| ||||||    
T  20480395 ttgattcattttgtatatgctacaggttactagagatccatgtaaggtgctagcagtttaaagaaatttaagcaagtatggcattaaggaaata 20480488  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 28524480 - 28524451
Alignment:
Q  285 ttgattcattttgtgtatgctacaggttac 314  Q
    ||||||||||||||||||||||||||||||    
T  28524480 ttgattcattttgtgtatgctacaggttac 28524451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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