View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5041-Insertion-9 (Length: 352)
Name: NF5041-Insertion-9
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5041-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 68 - 280
Target Start/End: Original strand, 22811171 - 22811382
Alignment:
| Q |
68 |
acatagcaaaagcaaagctttgtcatcaccttcaattctaactttaatgttctccaagtatgagtatcttgctatattctgtcaatttctctatgataag |
167 |
Q |
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| T |
22811171 |
acatagcaaaagcaaagctttgtcatcaccttcaattctga-ttcaatgttctccagtcaaaagtatcttgtaaaattctgtcaatttctctatgatagg |
22811269 |
T |
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| Q |
168 |
tttgttctccaccatcctatttgagtagggttgttgtttcataaactgtctataagtcaaagacttggtcgtgtaaaatgactccaactttacccacata |
267 |
Q |
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| T |
22811270 |
tttgttctccaccatcctaattgagtagggttgttgtttcaaaaactatatataagtcaaagactttgtcgtgtataatgcctccaactttgtccacata |
22811369 |
T |
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| Q |
268 |
gttgttatcgtcg |
280 |
Q |
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|||||| |||||| |
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| T |
22811370 |
gttgttgtcgtcg |
22811382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 68 - 273
Target Start/End: Complemental strand, 22870818 - 22870612
Alignment:
| Q |
68 |
acatagcaaaagcaaagctttgtcatcaccttcaattctaactttaatgttctccaagt-atgagtatcttgctatattctgtcaatttctctatgataa |
166 |
Q |
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| T |
22870818 |
acatagcaaaagcaaagctttgtcatcaccttcaattctga-ttcaatgttctccaagtcaaaagtatcttgtaaaattctgtcaatttctctatgatag |
22870720 |
T |
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| Q |
167 |
gtttgttctccaccatcctatttgagtagggttgttgtttcataaactgtctataagtc-aaagacttggtcgtgtaaaatgactccaactttacccaca |
265 |
Q |
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| T |
22870719 |
gtttgttctccaccatcctaattgagtaaggttgttgtttcaaaaattatcaataagtcaaaagactttgtcgtgtataatgacttcaactttgttcaca |
22870620 |
T |
|
| Q |
266 |
tagttgtt |
273 |
Q |
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|||||||| |
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| T |
22870619 |
tagttgtt |
22870612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 22811337 - 22811414
Alignment:
| Q |
277 |
gtcgtgtaaaatgactccaactttggccacatagttgttgtcgtcgcttcctt--tgacatcccttaatatatctttg |
352 |
Q |
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|||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
22811337 |
gtcgtgtataatgcctccaactttgtccacatagttgttgtcgtcgcttccttcgtgacatcctttaatatatctttg |
22811414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 22871357 - 22871298
Alignment:
| Q |
149 |
tcaatttctctatgataagtttgttctccaccatcctatttgagtagggttgttgtttca |
208 |
Q |
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| T |
22871357 |
tcaatttctctatgataggtttgttctccaccatcctaattgagtaaggttgttgtttca |
22871298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 3903934 - 3903978
Alignment:
| Q |
222 |
agtcaaagacttggtcgtgtaaaatgactccaactttacccacat |
266 |
Q |
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| T |
3903934 |
agtcaaagacttggtcatatacaatgactccaactttgcccacat |
3903978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 32429287 - 32429347
Alignment:
| Q |
174 |
ctccaccatcctatttgagtagggttgttgtttcataaactgtctataagtcaaagacttg |
234 |
Q |
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||||||||||||| ||||||| |||||||||||| || |||||||||||||| |||||| |
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| T |
32429287 |
ctccaccatcctaaatgagtagagttgttgtttcaagaattgtctataagtcaatgacttg |
32429347 |
T |
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