View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5041_low_1 (Length: 504)
Name: NF5041_low_1
Description: NF5041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5041_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 47 - 499
Target Start/End: Original strand, 2981466 - 2981918
Alignment:
| Q |
47 |
aggtctctcacggtaggagatctaacgaagtctcccaccttaaacggcacctgatttaagactttttagcgtactctttttaaaatctaagttttgatac |
146 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2981466 |
aggtctctcacggtaggagacctaatgaagtctcccaccttaaacggcacctgatttgagactttttagcgtactctttttaaaagctaagttttgatac |
2981565 |
T |
|
| Q |
147 |
tatttagtatcaatttcagtaggtaagttggacttcttaaaaagaacaaaaagaaaatgattgagcccaagaggtgttatcaattttcatgtataaggag |
246 |
Q |
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|||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2981566 |
tatttagtgtcaatttcaatgggtaagtttgacttcttaaaaagaacaaaaagaaaatgattgagcccaagaggtgttatcaattttcatgtataaggag |
2981665 |
T |
|
| Q |
247 |
ggcttcacgaaactagctttgagtcccatatcgagagctatggttttgagatgaagttagattcaatttgtattaaatagttaatgaactcggctaaaag |
346 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2981666 |
ggcttcacgaaactagcttcgagtcccatatcgagagctatgattttgagatgaagttagattcaatttgtatcaaatagttaatgaactcggctaaaag |
2981765 |
T |
|
| Q |
347 |
acgtattgttcggaagaagaagaaaaacccaaatttaatatcaagatagaatactatatctatctcattttaatagtcgttttagagttgtgcacatttt |
446 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2981766 |
acgtattgttcggaagaaggaaaaaaacccaaatttaatatcaagatagaatactatatctatctcattttaatagtcgttttagagttgtgcacatttt |
2981865 |
T |
|
| Q |
447 |
taaataaaatgattagttaagttgatttcaatagaaaaattagtataatctac |
499 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2981866 |
taaataaaataattagttaagttgatttcaatagaaaaattagtataatctac |
2981918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 495
Target Start/End: Complemental strand, 40109886 - 40109799
Alignment:
| Q |
408 |
atctcattttaatagtcgttttagagttgtgcacatttttaaataaaatgattagttaagttgatttcaatagaaaaattagtataat |
495 |
Q |
| |
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|||| ||||||||| ||| ||||||||||||||| |||| || ||||||||| || | ||||||||||||| |||||||||||||| |
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| T |
40109886 |
atcttattttaatattcgatttagagttgtgcacggtttttaaagaaatgattaattgaattgatttcaatagtaaaattagtataat |
40109799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 44648509 - 44648580
Alignment:
| Q |
420 |
tagtcgttttagagttgtgcacatttttaaataaaatgattagttaagttgatttcaatagaaaaattagtat |
492 |
Q |
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|||||||||||||||||| ||| |||| || ||||||||||||| ||||||||||||| | ||||||||||| |
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| T |
44648509 |
tagtcgttttagagttgtacacggtttttaa-aaaatgattagtttagttgatttcaatggtaaaattagtat |
44648580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 39890771 - 39890690
Alignment:
| Q |
410 |
ctcattttaatagtcgttttagagttgtgcac-atttttaaataaaatgattagttaagttgatttcaatagaaaaattagta |
491 |
Q |
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| T |
39890771 |
ctcattttaattctctttttagagttgtgcgcgatttttaaagaaa-tgattagttgagttgacttcaataataaaattagta |
39890690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 13431728 - 13431776
Alignment:
| Q |
49 |
gtctctcacggtaggagatctaacgaagtctcccaccttaaacggcacc |
97 |
Q |
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|||||||| ||||||||| ||| ||||||||||||| ||||||||||| |
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| T |
13431728 |
gtctctcatggtaggagacctattgaagtctcccaccctaaacggcacc |
13431776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 48498181 - 48498133
Alignment:
| Q |
49 |
gtctctcacggtaggagatctaacgaagtctcccaccttaaacggcacc |
97 |
Q |
| |
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||||||||| |||||||| ||| ||||||||||||||||||||||||| |
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| T |
48498181 |
gtctctcactgtaggagacctattgaagtctcccaccttaaacggcacc |
48498133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 478
Target Start/End: Complemental strand, 38033033 - 38032959
Alignment:
| Q |
404 |
atctatctcattttaatagtcgttttagagttgtgcacatttttaaataaaatgattagttaagttgatttcaat |
478 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||| | || | || |||||| ||| ||||| |||||||||| |
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| T |
38033033 |
atctatctaattttaatagtcgttttagagtcgtgcgcggttattaagaaaatggttacttaagctgatttcaat |
38032959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 476
Target Start/End: Original strand, 49835031 - 49835098
Alignment:
| Q |
409 |
tctcattttaatagtcgttttagagttgtgcacatttttaaataaaatgattagttaagttgatttca |
476 |
Q |
| |
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||||||||||||||||||||||||||| || | |||||| |||||||||||| ||||||||||| |
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| T |
49835031 |
tctcattttaatagtcgttttagagttttgtgcgcgtttaaaagaaatgattagttgagttgatttca |
49835098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 438
Target Start/End: Original strand, 37988891 - 37988920
Alignment:
| Q |
409 |
tctcattttaatagtcgttttagagttgtg |
438 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37988891 |
tctcattttaatagtcgttttagagttgtg |
37988920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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