View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5042-Insertion-1 (Length: 1200)

Name: NF5042-Insertion-1
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5042-Insertion-1
NF5042-Insertion-1
[»] chr4 (13 HSPs)
chr4 (466-1031)||(32189589-32190149)
chr4 (7-407)||(32190208-32190603)
chr4 (272-352)||(3171031-3171111)
chr4 (690-750)||(55813451-55813511)
chr4 (692-759)||(48620471-48620539)
chr4 (692-732)||(29114065-29114105)
chr4 (692-732)||(33500740-33500780)
chr4 (692-736)||(35959382-35959426)
chr4 (690-733)||(15451157-15451200)
chr4 (692-731)||(37969565-37969604)
chr4 (692-750)||(4441841-4441899)
chr4 (696-761)||(6121452-6121518)
chr4 (690-759)||(52430366-52430436)
[»] chr2 (7 HSPs)
chr2 (692-761)||(15803361-15803431)
chr2 (696-761)||(36870426-36870493)
chr2 (692-732)||(13018300-13018340)
chr2 (692-732)||(31083017-31083057)
chr2 (690-761)||(31584587-31584659)
chr2 (692-732)||(43572366-43572406)
chr2 (687-732)||(40212222-40212267)
[»] chr5 (4 HSPs)
chr5 (692-755)||(35708617-35708681)
chr5 (692-749)||(4841530-4841588)
chr5 (690-732)||(13569581-13569623)
chr5 (690-748)||(41923362-41923420)
[»] chr3 (9 HSPs)
chr3 (692-761)||(53888675-53888745)
chr3 (692-761)||(35283276-35283346)
chr3 (692-755)||(27922108-27922173)
chr3 (703-761)||(9768364-9768424)
chr3 (692-761)||(40118723-40118792)
chr3 (692-732)||(5939603-5939643)
chr3 (692-732)||(44400918-44400958)
chr3 (692-732)||(48908714-48908754)
chr3 (703-761)||(9773598-9773658)
[»] chr1 (9 HSPs)
chr1 (692-761)||(49102797-49102867)
chr1 (690-761)||(42806358-42806430)
chr1 (690-761)||(6538176-6538247)
chr1 (692-732)||(2909336-2909376)
chr1 (692-732)||(37649438-37649478)
chr1 (692-759)||(43036145-43036213)
chr1 (692-732)||(52067969-52068009)
chr1 (696-750)||(17556992-17557047)
chr1 (722-761)||(25561171-25561210)
[»] chr8 (6 HSPs)
chr8 (277-370)||(26598199-26598292)
chr8 (277-370)||(4656412-4656505)
chr8 (692-736)||(27085579-27085623)
chr8 (692-736)||(27097384-27097428)
chr8 (690-748)||(1111057-1111115)
chr8 (692-734)||(39780032-39780074)
[»] chr7 (5 HSPs)
chr7 (692-761)||(22556527-22556596)
chr7 (277-364)||(5743658-5743745)
chr7 (690-761)||(32820049-32820121)
chr7 (692-732)||(42254187-42254227)
chr7 (690-759)||(46611705-46611773)
[»] scaffold0598 (1 HSPs)
scaffold0598 (709-761)||(9241-9294)
[»] scaffold0128 (1 HSPs)
scaffold0128 (683-732)||(26600-26649)
[»] scaffold0632 (1 HSPs)
scaffold0632 (692-759)||(1898-1966)
[»] scaffold0006 (1 HSPs)
scaffold0006 (707-759)||(59696-59749)
[»] chr6 (1 HSPs)
chr6 (692-761)||(25073081-25073153)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 466 - 1031
Target Start/End: Complemental strand, 32190149 - 32189589
Alignment:
Q  466 gataatggaaggggtaaactcatcttagtagcttaaaagttctttgaagattagtcatttcttcagctaacaacatggaatatttcgtaacaataacatc 565  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32190149 gataatgggaggggtaaactcatcttagtagcttaaaagttctttgaagattagtcatttcttcagctaacaacatggaatatttcgtaacaataacatc 32190050  T
Q  566 ataattaannnnnnnnnnnnnnnnacgaaagtgccataaacgtaactcagttgttagacattgcattagtatgtggagatgattaaggttcaaacaatat 665  Q
    |||| | |                | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32190049 ataaattaatttttttttttgtttatgaaagttccataaacgtaactcagttgttagacattgcattagtatgtggagatgattaaggttcaaacaatat 32189950  T
Q  666 attttatatttatttatcttaaaagttttgtttggaagtttggaggggagggaaaggaaaggctttgg-gggagagaaatatagggggaaattgagacta 764  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  32189949 attttatatttatttatcttaaaagttttgtttgggagtttggaggagagggaaaggaaaggctttggagagagagaaatataggggaaaattgagacta 32189850  T
Q  765 tagtaaacaaaagtttgattagaagtaagtaaagtttgatcaataattttgtttctataaaaaattaaacttgggttctcttaaacaattcgtcggtaga 864  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||    
T  32189849 tagtaaacaaaagtttgattagaagtaagtaaagtttgatcaataattttgtttatataaaaaattgaacttgggttctcttaaacaatttgtc-gtaga 32189751  T
Q  865 tgaagcttattaatcacttaagttcaatcacttaacaatagagattggactcgataacaggaaatatgtggagatgannnnnnnnnnnaatcat-aaaac 963  Q
    ||||||||||||||||||||||||           |||||||||||| ||||||||||| |||||||||||||||||           |   || |||||    
T  32189750 tgaagcttattaatcacttaagtt-----------caatagagattgaactcgataacaagaaatatgtggagatgatcttttttttaatctataaaaac 32189662  T
Q  964 t-atatgttgtgaactcg--ccaatta-ttagagctcaatagctca-ttactttgtaaaaatattttctattt 1031  Q
    | ||||||||||||||||  | ||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  32189661 taatatgttgtgaactcggccaaattatttagagctcaatagctcatttactttgtaaaaatattttctattt 32189589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 32190603 - 32190208
Alignment:
Q  7 agataatgtgggtcacgttatcaattaagacatacaaataagtggggaatacgtgtgtcccttgaaacttgaaacaccgcttgcgtcagaccttaactat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32190603 agataatgtgggtcacgttatcaattaagacatacaaataagtggggaatacgtgtgtccgttgaaacttgaaacaccgcttgcgtcagaccttaactat 32190504  T
Q  107 cgctccttcttatccattctatcccagaatatgtgccttagggctatttcagnnnnnnnnnnnnnnnnncatacgtagtatatggttgttagaattcacc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||| ||||||||||||||||||||||||||    
T  32190503 cgctccttcttatccattctatcccagaatatgtgccttagggctatttcagttttttctttttcttttcataagtagtatatggttgttagaattcacc 32190404  T
Q  207 tacagtaataagtgaagtatattattacaatccattgttcgaaataggattatatgctgttataacacatagttttcaatctcaactattcgatctaaaa 306  Q
    |||     ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32190403 tac-----taagtgaagtatattattacaatgcattgttcgaaataggattatctgctgttataacacataattttcaatctcaactattcgatctaaaa 32190309  T
Q  307 tgaacggttgaaataaaaaattgcgtgaaactacgtgctgtttttatagtagcaaaacttggtctatattattcttagcaattgagatatgttcacggag 406  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32190308 tgaaccgttgaaataaaaaattgcgtgaaactacgtgctgtttttatagcagcaaaacttggtctatattgttcttagcaattgagatatgttcacggag 32190209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 3171111 - 3171031
Alignment:
Q  272 cacatagttttcaatctcaactattcgatctaaaatgaacggttgaaataaaaaattgcgtgaaactacgtgctgttttta 352  Q
    |||| ||||||||||||||||  |||||| | |||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  3171111 cacacagttttcaatctcaaccgttcgatttgaaatgaacggttgagatcaaaaaatgcgtgaaactccgtgctgttttta 3171031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 690 - 750
Target Start/End: Original strand, 55813451 - 55813511
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatataggg 750  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||    
T  55813451 gttttgtttggaagtttggaggggagtgaaagaaaaggctttgggggataaaaatataggg 55813511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 692 - 759
Target Start/End: Complemental strand, 48620539 - 48620471
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg-ggggagagaaatatagggggaaattga 759  Q
    ||||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||  |||||||    
T  48620539 tttgtttgcgagtttggaggggaggggaaggaaaggctttggggggagagaaatatagggaaaaattga 48620471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Original strand, 29114065 - 29114105
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  29114065 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 29114105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Complemental strand, 33500780 - 33500740
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  33500780 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 33500740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 736
Target Start/End: Complemental strand, 35959426 - 35959382
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttggggg 736  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||    
T  35959426 tttgtttgggagtttggaggggaggggtaggaaaggctttggggg 35959382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 690 - 733
Target Start/End: Original strand, 15451157 - 15451200
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttgg 733  Q
    |||||||||||||||||||||||||||  ||||||||| |||||    
T  15451157 gttttgtttggaagtttggaggggaggagaaggaaaggttttgg 15451200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 692 - 731
Target Start/End: Original strand, 37969565 - 37969604
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggcttt 731  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  37969565 tttgtttggaagtttggaggggaggggaaggaaagacttt 37969604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 692 - 750
Target Start/End: Original strand, 4441841 - 4441899
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatataggg 750  Q
    |||| |||| |||||||||||||| | || |||||| ||||| ||||||||||||||||    
T  4441841 tttgcttgggagtttggaggggagaggaaagaaaggttttggtggagagaaatataggg 4441899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 696 - 761
Target Start/End: Complemental strand, 6121518 - 6121452
Alignment:
Q  696 tttggaagtttggaggggagggaaaggaaaggctttggggga-gagaaatatagggggaaattgaga 761  Q
    ||||| |||||| ||||||||| |||||||| |||||| ||| |||||||||| ||| |||||||||    
T  6121518 tttgggagtttgtaggggaggggaaggaaagactttggaggaagagaaatataagggaaaattgaga 6121452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 690 - 759
Target Start/End: Original strand, 52430366 - 52430436
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttggggg-agagaaatatagggggaaattga 759  Q
    |||||||||||||||||| |||||||   || |||||  |||||||| ||||||||||||||| |||||||    
T  52430366 gttttgtttggaagtttgaaggggagaagaatgaaagattttgggggcagagaaatataggggaaaattga 52430436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 692 - 761
Target Start/End: Complemental strand, 15803431 - 15803361
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg-ggggagagaaatatagggggaaattgaga 761  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  15803431 tttgtttgggagtttggaggggaggggaaggaaaggctttggggggagagaaatataggggaaaattgaga 15803361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 696 - 761
Target Start/End: Complemental strand, 36870493 - 36870426
Alignment:
Q  696 tttggaagtttggaggggagg-gaaaggaaaggctttggggg-agagaaatatagggggaaattgaga 761  Q
    ||||| ||||||||||||||| | |||||||||||||||||| ||| ||||||||||| |||||||||    
T  36870493 tttgggagtttggaggggaggaggaaggaaaggctttggggggagaaaaatataggggaaaattgaga 36870426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Original strand, 13018300 - 13018340
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  13018300 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 13018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Complemental strand, 31083057 - 31083017
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  31083057 tttgtttgggagtttggaggggaggggaaggaaaggctttg 31083017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 690 - 761
Target Start/End: Original strand, 31584587 - 31584659
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttg-ggggagagaaatatagggggaaattgaga 761  Q
    ||||||||||  |||||||||||||||| ||| |||| ||||| |||||||||||||||| |  |||||||||    
T  31584587 gttttgtttgagagtttggaggggaggggaagaaaagactttgaggggagagaaatatagagaaaaattgaga 31584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Original strand, 43572366 - 43572406
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  43572366 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 43572406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 687 - 732
Target Start/End: Complemental strand, 40212267 - 40212222
Alignment:
Q  687 aaagttttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    |||| ||||||||| ||||||||||||| |||||| ||||||||||    
T  40212267 aaagctttgtttgggagtttggaggggaaggaaagaaaaggctttg 40212222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 692 - 755
Target Start/End: Original strand, 35708617 - 35708681
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttgggg-gagagaaatatagggggaaa 755  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  35708617 tttgtttgggagtttgaaggggaggggaaggaaaggctttggggagagagaaatatagggggaaa 35708681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 692 - 749
Target Start/End: Original strand, 4841530 - 4841588
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggcttt-gggggagagaaatatagg 749  Q
    ||||||||| |||||||||||||||| || |||||||||| | ||||||||||||||||    
T  4841530 tttgtttgggagtttggaggggaggggaaagaaaggctttcgagggagagaaatatagg 4841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 690 - 732
Target Start/End: Complemental strand, 13569623 - 13569581
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||    
T  13569623 gttttgtttgggagtttggaggggaaggaaaggaaagactttg 13569581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 690 - 748
Target Start/End: Complemental strand, 41923420 - 41923362
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatatag 748  Q
    ||||||||||||||||||||||||| || |||  | ||||||||||| | |||||||||    
T  41923420 gttttgtttggaagtttggaggggaagggaagagatggctttgggggtgggaaatatag 41923362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 692 - 761
Target Start/End: Complemental strand, 53888745 - 53888675
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttggg-ggagagaaatatagggggaaattgaga 761  Q
    ||||||||| |||||||||||||||| |||||||||||||||| ||| | ||||||||||| |||||||||    
T  53888745 tttgtttgggagtttggaggggaggggaaggaaaggctttgggtggacaaaaatataggggaaaattgaga 53888675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 692 - 761
Target Start/End: Complemental strand, 35283346 - 35283276
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaagg-ctttgggggagagaaatatagggggaaattgaga 761  Q
    ||||||||| |||||||||||||||| |||||||||  |||||||||||||| |||||| | |||||||||    
T  35283346 tttgtttgggagtttggaggggaggggaaggaaaggattttgggggagagaagtataggagaaaattgaga 35283276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 692 - 755
Target Start/End: Complemental strand, 27922173 - 27922108
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttgggggag--agaaatatagggggaaa 755  Q
    ||||||||| |||||| ||||||||| ||||||||| |||||||| |  |||||||||||||||||    
T  27922173 tttgtttgggagtttgaaggggaggggaaggaaaggatttgggggggtgagaaatatagggggaaa 27922108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 703 - 761
Target Start/End: Complemental strand, 9768424 - 9768364
Alignment:
Q  703 gtttggaggggagggaaaggaaaggctttggg--ggagagaaatatagggggaaattgaga 761  Q
    ||||||||||||||| ||| |||| |||||||  ||||||||||||||||| |||||||||    
T  9768424 gtttggaggggaggggaagcaaagactttgggaaggagagaaatataggggaaaattgaga 9768364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 692 - 761
Target Start/End: Original strand, 40118723 - 40118792
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatatagggggaaattgaga 761  Q
    ||||||||  ||||||||||| |||| |||||| ||||||||||| ||||||||| | ||||||| ||||    
T  40118723 tttgtttgagagtttggagggtaggggaaggaagggctttgggggtgagaaatatcgagggaaatggaga 40118792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Original strand, 5939603 - 5939643
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  5939603 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 5939643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Complemental strand, 44400958 - 44400918
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  44400958 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 44400918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Original strand, 48908714 - 48908754
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  48908714 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 48908754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 703 - 761
Target Start/End: Complemental strand, 9773658 - 9773598
Alignment:
Q  703 gtttggaggggagggaaaggaaaggctttggg--ggagagaaatatagggggaaattgaga 761  Q
    |||||||||| |||| |||||||  |||||||  ||||||||||||||||| |||||||||    
T  9773658 gtttggagggaaggggaaggaaatactttgggagggagagaaatataggggaaaattgaga 9773598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 692 - 761
Target Start/End: Original strand, 49102797 - 49102867
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggcttt-gggggagagaaatatagggggaaattgaga 761  Q
    ||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||  |||||||||    
T  49102797 tttgtttgggagtttggaggggaggggaaggaagggctttggggggagagaaatatagggaaaaattgaga 49102867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 690 - 761
Target Start/End: Complemental strand, 42806430 - 42806358
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttggg-ggagagaaatatagggggaaattgaga 761  Q
    ||||||||||| |||||||||||||| | ||| ||| | |||||| ||||||||||||||||| |||||||||    
T  42806430 gttttgtttgggagtttggaggggagaggaagaaaaagttttgggaggagagaaatataggggtaaattgaga 42806358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 690 - 761
Target Start/End: Complemental strand, 6538247 - 6538176
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatatagggggaaattgaga 761  Q
    |||||||||||||||||| |||||| || |||||||| |||||  ||||| ||||| ||||| |||||||||    
T  6538247 gttttgtttggaagtttgaaggggaagggaaggaaagactttgaaggagataaatacaggggaaaattgaga 6538176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Complemental strand, 2909376 - 2909336
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  2909376 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 2909336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Original strand, 37649438 - 37649478
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  37649438 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 37649478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 759
Target Start/End: Original strand, 43036145 - 43036213
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg-ggggagagaaatatagggggaaattga 759  Q
    ||||||||| |||||||||||||||| |||||| ||||||| |||| |||||||| | ||| |||||||    
T  43036145 tttgtttgggagtttggaggggaggggaaggaagggctttgtggggtgagaaatagaagggaaaattga 43036213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Original strand, 52067969 - 52068009
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  52067969 tttgtttggaagtttggaggggaaggaaaagaaaggctttg 52068009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 696 - 750
Target Start/End: Complemental strand, 17557047 - 17556992
Alignment:
Q  696 tttggaagtttggaggggagggaaaggaaaggctttg-ggggagagaaatataggg 750  Q
    ||||| |||||||||||||||| |||||||||||||| | ||| ||||||||||||    
T  17557047 tttgggagtttggaggggaggggaaggaaaggctttgcgaggatagaaatataggg 17556992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 722 - 761
Target Start/End: Original strand, 25561171 - 25561210
Alignment:
Q  722 gaaaggctttgggggagagaaatatagggggaaattgaga 761  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  25561171 gaaaggctttgggggagagaaatatagaggaaaattgaga 25561210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 26598292 - 26598199
Alignment:
Q  277 agttttcaatctcaactattcgatctaaaatgaacggttgaaataaaaaattgcgtgaaactacgtgctgtttttatagtagcaaaacttggtc 370  Q
    |||||||||||||| |  |||||||| | |||||||| ||| || ||||| ||||||||| | ||||||||||||| || |||||||| |||||    
T  26598292 agttttcaatctcacccgttcgatctgagatgaacggctgagatcaaaaactgcgtgaaattgcgtgctgtttttacagcagcaaaacctggtc 26598199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 4656412 - 4656505
Alignment:
Q  277 agttttcaatctcaactattcgatctaaaatgaacggttgaaataaaaaattgcgtgaaactacgtgctgtttttatagtagcaaaacttggtc 370  Q
    |||||| ||| |||||| |||||| | | |||||||||||| |||||||||||| |||||||  |||||| ||||| |  | ||||||||||||    
T  4656412 agtttttaatttcaactgttcgatttgagatgaacggttgagataaaaaattgcatgaaactgtgtgctgattttacaacaacaaaacttggtc 4656505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 736
Target Start/End: Complemental strand, 27085623 - 27085579
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttggggg 736  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||    
T  27085623 tttgtttgggagtttgtaggggagagaaaggaaaggctttggggg 27085579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 736
Target Start/End: Complemental strand, 27097428 - 27097384
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttggggg 736  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||    
T  27097428 tttgtttgggagtttgtaggggagagaaaggaaaggctttggggg 27097384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 690 - 748
Target Start/End: Original strand, 1111057 - 1111115
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatatag 748  Q
    ||||||||||| ||||||||||||| || |||| | ||||||||||| | |||||||||    
T  1111057 gttttgtttgggagtttggaggggaagggaagggagggctttgggggtgggaaatatag 1111115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 692 - 734
Target Start/End: Complemental strand, 39780074 - 39780032
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttggg 734  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||    
T  39780074 tttgtttgggagtttggaggggagggaaaggaagggcgttggg 39780032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 692 - 761
Target Start/End: Original strand, 22556527 - 22556596
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatatagggggaaattgaga 761  Q
    |||||||| ||||||||||||||||  ||||||||||| | ||||| ||||||||||||  |||||||||    
T  22556527 tttgtttgtaagtttggaggggaggagaaggaaaggctctcggggatagaaatatagggaaaaattgaga 22556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 5743658 - 5743745
Alignment:
Q  277 agttttcaatctcaactattcgatctaaaatgaacggttgaaataaaaaattgcgtgaaactacgtgctgtttttatagtagcaaaac 364  Q
    ||||||||||||||||  ||| |||||| |||||||| ||| ||||||||||  || ||||| |||| |||||||| || ||||||||    
T  5743658 agttttcaatctcaaccgttctatctaagatgaacggctgagataaaaaattatgtaaaactgcgtgttgtttttaaagcagcaaaac 5743745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 690 - 761
Target Start/End: Original strand, 32820049 - 32820121
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttggg-ggagagaaatatagggggaaattgaga 761  Q
    ||||| ||||||||||||||||| |||| |||||| ||||||||| || | ||||||||| ||||||| ||||    
T  32820049 gttttatttggaagtttggagggaaggggaaggaagggctttgggaggtgggaaatatagagggaaatagaga 32820121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 732
Target Start/End: Complemental strand, 42254227 - 42254187
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  42254227 tttgtttgggagtttggaggggaaggaaaggaaaggctttg 42254187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 759
Target Start/End: Original strand, 46611705 - 46611773
Alignment:
Q  690 gttttgtttggaagtttggaggggagggaaaggaaaggctttgggggagagaaatatagggggaaattga 759  Q
    |||||||||| |||||||||||||| |  ||| || |||||| |||| |||| |||||||||||||||||    
T  46611705 gttttgtttgcaagtttggaggggaagagaagaaatggcttt-ggggtgagagatatagggggaaattga 46611773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 709 - 761
Target Start/End: Original strand, 9241 - 9294
Alignment:
Q  709 aggggagggaaaggaaaggctttggg-ggagagaaatatagggggaaattgaga 761  Q
    ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||    
T  9241 aggggaggggaagcaaaggttttgggaggagagaaatatagggggaaattgaga 9294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 683 - 732
Target Start/End: Complemental strand, 26649 - 26600
Alignment:
Q  683 cttaaaagttttgtttggaagtttggaggggagggaaaggaaaggctttg 732  Q
    |||||| | ||||||||| ||||||||||||| |||||||||||||||||    
T  26649 cttaaaggctttgtttgggagtttggaggggaaggaaaggaaaggctttg 26600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 692 - 759
Target Start/End: Original strand, 1898 - 1966
Alignment:
Q  692 tttgtttggaagtttggaggggagggaaaggaaag-gctttgggggagagaaatatagggggaaattga 759  Q
    ||||||||| |||||||| ||||||| |||||||| |||  |||||||||||||||||||  |||||||    
T  1898 tttgtttgggagtttggaagggaggggaaggaaagagctcggggggagagaaatatagggaaaaattga 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 707 - 759
Target Start/End: Original strand, 59696 - 59749
Alignment:
Q  707 ggaggggagggaaaggaaaggctttgg-gggagagaaatatagggggaaattga 759  Q
    ||||||||||| |||||||| |||||| |||||||||||||||| | |||||||    
T  59696 ggaggggaggggaaggaaagtctttggagggagagaaatataggagaaaattga 59749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 692 - 761
Target Start/End: Original strand, 25073081 - 25073153
Alignment:
Q  692 tttgtttggaagtttggagggg--agggaaaggaaaggctttgggg-gagagaaatatagggggaaattgaga 761  Q
    ||||||||| ||||||||||||  |||| ||||| || |||||||| |||||||||||||||  |||||||||    
T  25073081 tttgtttgggagtttggaggggggaggggaaggacagactttggggggagagaaatatagggaaaaattgaga 25073153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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