View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042-Insertion-12 (Length: 525)
Name: NF5042-Insertion-12
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042-Insertion-12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 62 - 525
Target Start/End: Original strand, 43488410 - 43488872
Alignment:
| Q |
62 |
ggaacgagtatacaaaccatgctccctagacaacatagaattaatcaatacagaattaaaacacttaatgcatgtctgaaatcacgttgagttgatgaaa |
161 |
Q |
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| T |
43488410 |
ggaacgagtatataaaccatgctcc-taaacaacatagaattaatcaatacagaattaaaacacttaatgcatgtctgaaatcacgttgagttgatgaaa |
43488508 |
T |
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| Q |
162 |
tcatggtgatcttaccgtaatattattgaataaaattacggtgactcactgagattctattaaacttaccatcaattcaaacatacggttaacttctatg |
261 |
Q |
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| T |
43488509 |
tcatgatggtctcaccgtaatattattgaataaaattacggtgactcgctgagattctattaaacttaccatcaattcaaacatacggttaacttctatg |
43488608 |
T |
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| Q |
262 |
ttataagataagattaattggtgattgtgaaatcattgatatctcttgtaatagcaggaatgcaacttgaacttctagcaagcccaccacctttcttttc |
361 |
Q |
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| T |
43488609 |
ttataagataagattaattggtgattgtgaaatcattgatatctcttgtaatagcaggaatgcaacttgaacttctagcaagcccaccacctttcttttc |
43488708 |
T |
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| Q |
362 |
accacctttgtctctagggttgaatgacttagcccttctcccttccattttactctttttcagcatctctttcatagcttcagcttgaaacaaaacagga |
461 |
Q |
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| T |
43488709 |
accacctttgtctctagggttgaatgacttagcccttctcccttccattttactctttttcagcatctctttcatagcttcagcttgaaacaaaacagga |
43488808 |
T |
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| Q |
462 |
aaactccttccaaatttattaaacctaacacatgcactcatgtgtgcactcaaagcctcttcaa |
525 |
Q |
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| T |
43488809 |
aaactccttccaaatttattaaacctaacacatgcactcatgtgtgcactcaaagcctcttcaa |
43488872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 43488355 - 43488384
Alignment:
| Q |
7 |
agactctgaggagtagtcactagtcagtag |
36 |
Q |
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| T |
43488355 |
agactctgaggagtagtcactagtcagtag |
43488384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 507
Target Start/End: Complemental strand, 4346625 - 4346518
Alignment:
| Q |
400 |
tcccttccattttactctttttcagcatctctttcatagcttcagcttgaaacaaaacaggaaaactccttccaaatttattaaacctaacacatgcact |
499 |
Q |
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| T |
4346625 |
tcccatccatgttactctttttcaacatttctttcatagcttgtgcttgaaacaaaactggaaaagccctaccatatttgttaaacttaacacatgcatt |
4346526 |
T |
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| Q |
500 |
catgtgtg |
507 |
Q |
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| T |
4346525 |
catatgtg |
4346518 |
T |
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