View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042-Insertion-15 (Length: 400)
Name: NF5042-Insertion-15
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042-Insertion-15 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 361
Target Start/End: Complemental strand, 43231822 - 43231490
Alignment:
| Q |
2 |
ccaacagttatttcattaatgcccaacaaatggatcttactggttcgtcaacctgataatttccactagaatagaacnnnnnnnngctaattatagcact |
101 |
Q |
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| T |
43231822 |
ccaaaagttatttcattaatgcccaacaaatggatcttactggctcgtcaacctgataatttccactagaatagaacttttttttgctaattatagcact |
43231723 |
T |
|
| Q |
102 |
gttgccacactttattctcctcctctcctttttctttttccttgaccaaatccattacctcttgggttgatgcatgtatttacttgattcccatgcttaa |
201 |
Q |
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| T |
43231722 |
gttgccacactttattctcctcctctcctt-------------gaccaaatccattacctcct---------catatatttacttgattcccacgcttaa |
43231645 |
T |
|
| Q |
202 |
ctcttcatcctttacattgacatcttaataaattcgattttgtttgtttaatttgctgaatcgatgtgttggctggttgtttctgtcgggttgttgattc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
43231644 |
ctcttcatcctttacattgacatcttaataaattcgattttgtttgttt-----gctgaatcgatgcgttggctggttgtttctgtcgtgttgttgattc |
43231550 |
T |
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| Q |
302 |
tttaaatactcgtgtattgttcaaggtatgtttgtttggcttttcatttgaagcatttgg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43231549 |
tttaaatactcgtgtattgttcaaggtatgtttgtttggcttttgatttgaagcatttgg |
43231490 |
T |
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