View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042-Insertion-16 (Length: 227)
Name: NF5042-Insertion-16
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042-Insertion-16 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 4189571 - 4189352
Alignment:
| Q |
8 |
aaagtttgtggctttgaatatgattcatttgtatcataaaattcccattttgataacaccatttgctttatctcgttcaaatcttcacgcgtgagattga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4189571 |
aaagtttgtggctttgaatatgattcatttgtatcataaaattcccattttgataacaccatttgctttatcttgttcaaatcttcacgcgtgagattga |
4189472 |
T |
|
| Q |
108 |
atgtggcacgaacggagtcttcaagttttggttcaaagtgtaaaatatttaagctacgttcgtttcctttttcgcttgggaaaatcgtggatatgatctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4189471 |
atgtggcacgaacggagtcttcaagttttggttcaaagtgtaaaatatttaagctatgttcgtttcctttttcgcttgggaaaatcgtggatatgatctc |
4189372 |
T |
|
| Q |
208 |
ggtccagctatttgtgaatg |
227 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4189371 |
ggtccagctatttgtgaatg |
4189352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 4192691 - 4192536
Alignment:
| Q |
8 |
aaagtttgtggctttgaatatgattcatttgtatcataaaattcccattttgataacaccatttgctttatctcgttcaaatcttcacgcgtgagattga |
107 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| ||||| || |||| |||||||| | |||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
4192691 |
aaagattgtggctttaaatttgattcatttttatcaacaacttccaattttgatgataccatttgctttatcttgatcaaatcttcaagcgtgagattga |
4192592 |
T |
|
| Q |
108 |
atgtggcacgaacggagtcttcaagttttggttcaaagtgtaaaatatttaagcta |
163 |
Q |
| |
|
| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4192591 |
acgtggcacgaactgagtctttgagttttggttcaaagtgtaaaatatttaagcta |
4192536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 4234164 - 4233986
Alignment:
| Q |
47 |
aattcccattttgataacaccatttgctttatctcgttcaaatcttcacgcgtgagattgaatgtggcacgaacggagtcttcaagttttggttcaaagt |
146 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| |||||||| | |||||| ||||||| |||||||||||||| |
|
|
| T |
4234164 |
aattcccattttgataataccatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttcgagttttggttcaaaag |
4234065 |
T |
|
| Q |
147 |
gtaaaatatttaagctacgttcgtttcctttttcgcttgggaaaatcgtggatatgatctcggtccagctatttgtgaa |
225 |
Q |
| |
|
||||||| || ||||| | ||| ||||||||||| ||||||| ||| ||| ||| ||||| |||||| | |||||||| |
|
|
| T |
4234064 |
gtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttattatctccgtccagttttttgtgaa |
4233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 4196453 - 4196279
Alignment:
| Q |
15 |
gtggctttgaatatgattcatttgtatcataaaattcccattttgataacaccatttgctttatctcgttcaaatcttcacgcgtgagattgaatgtggc |
114 |
Q |
| |
|
||||||| |||| | |||||||||| || | ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||| || || |
|
|
| T |
4196453 |
gtggcttagaatttaattcatttgtgtccaataattcccattttgttaacaccatttgctttatcttgttcaaatcttcacgtgtgagcttgaacgtagc |
4196354 |
T |
|
| Q |
115 |
acgaacggagtcttcaagttttggttcaaagtgtaaaatatttaagctacgttcgtttcctttttcgcttgggaa |
189 |
Q |
| |
|
||||| |||||||| || ||||||||||| |||||| || |||| | ||||||||||||||| ||||||| |
|
|
| T |
4196353 |
acgaagagagtcttcgaggtttggttcaaaagctaaaatcttcaagcatctttcgtttcctttttcatttgggaa |
4196279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 4251178 - 4251038
Alignment:
| Q |
49 |
ttcccattttgataacaccatttgctttatctcgttcaaatcttcacgcgtgagattgaatgtggcacgaacggagtcttcaagttttggttcaaagtgt |
148 |
Q |
| |
|
||||||| | |||||||| |||||||||||| | |||||||||| | |||| || || || |||||||| |||||||| |||| ||||||||| | |
|
|
| T |
4251178 |
ttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtagcacgaacagagtcttcgagttgtggttcaaatggg |
4251079 |
T |
|
| Q |
149 |
aaaatatttaagctacgttcgtttcctttttcgcttgggaa |
189 |
Q |
| |
|
||||| |||||||| | || ||||||||||| |||||||| |
|
|
| T |
4251078 |
aaaatctttaagcttctatcatttcctttttcacttgggaa |
4251038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University