View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042-Insertion-18 (Length: 186)
Name: NF5042-Insertion-18
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042-Insertion-18 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 12736754 - 12736575
Alignment:
| Q |
8 |
accttagttgtgttttatgagttgagttttccctcgttattgagtatttggtaaattaaaacatagcatatattgttagctgcgactctccatgaatgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12736754 |
accttagttgtgttttatgagttgagttttccctcgttattgagtatttggtaaattaaaacatagcatatattgttagctgcgactctccatgaatgaa |
12736655 |
T |
|
| Q |
108 |
tatctatcattgatacagcttgaggcgcttgc-agaaaaggttaaatttcaaatgtattggtggttgaaatcgtattaca |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12736654 |
tatctatcattgatacagcttgaggcgcttgcaagaaaaggttaaattccaaatgtattggtggttgaaatcgtattaca |
12736575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 23659867 - 23659809
Alignment:
| Q |
123 |
cagcttgaggcgcttgcagaaaaggttaaatttcaaatgtattggtggttgaaatcgta |
181 |
Q |
| |
|
||||||||| | |||| ||||||||||||| | |||| ||||| ||||||||||||||| |
|
|
| T |
23659867 |
cagcttgagactcttggagaaaaggttaaactccaaacgtattagtggttgaaatcgta |
23659809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 9759936 - 9759976
Alignment:
| Q |
146 |
ggttaaatttcaaatgtattggtggttgaaatcgtattaca |
186 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
9759936 |
ggttaaacttcaaatgtattggtggttgaaagcgaattaca |
9759976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 31635856 - 31635916
Alignment:
| Q |
126 |
cttgaggcgcttgcagaaaaggttaaatttcaaatgtattggtggttgaaatcgtattaca |
186 |
Q |
| |
|
|||||| | ||||| |||||| ||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
31635856 |
cttgagactcttgctgaaaagattaaacttcaaacgtattggtggttgaaatcgtactaca |
31635916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 13026375 - 13026320
Alignment:
| Q |
123 |
cagcttgaggcgcttgcagaaaaggttaaatttcaaatgtattggtggttgaaatc |
178 |
Q |
| |
|
||||||||| | |||||||||||||||||| | |||| |||||||||| ||||||| |
|
|
| T |
13026375 |
cagcttgagactcttgcagaaaaggttaaactccaaacgtattggtggctgaaatc |
13026320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University