View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042-Insertion-2 (Length: 1047)
Name: NF5042-Insertion-2
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042-Insertion-2 |
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| [»] scaffold0373 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 13888770 - 13889097
Alignment:
| Q |
7 |
aaattcaccacatgttgggtaaagttcacgttgcatgagcttatcggaagtagaagttttcccttcttcaaactatacaa-gtaagtagcaatgtccctc |
105 |
Q |
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| T |
13888770 |
aaattcaccacatgttgggtaaagttcacgttgcatgagcttatcggaagtagaagttttcccttcttcaaactatacaaagtaagtagcaatgtccctc |
13888869 |
T |
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| Q |
106 |
tagtccctggtctcctttcaatattctcatcttaccgttatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagag |
205 |
Q |
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| T |
13888870 |
tagtccctggtctcctttcaacattctcatcttaccgttatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagag |
13888969 |
T |
|
| Q |
206 |
agttggacgacctgcgatgatgttatatgatgaaaggggagcgtccaccaagctttggcatctgtctgttcctcatgagaagcccaccaagctttctgta |
305 |
Q |
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| T |
13888970 |
agttggaagacctgcgatgatgttatataatgaaaggggagcgtccaccaagctttggcatcagtctgttcctcatgagaagcccaccaagctttctgta |
13889069 |
T |
|
| Q |
306 |
gcacctaaattttaacaacgaacgtgca |
333 |
Q |
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| T |
13889070 |
gcacctaaattttaacaatgaacatgca |
13889097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 376 - 703
Target Start/End: Original strand, 13889123 - 13889436
Alignment:
| Q |
376 |
gcactaaaatatttacgatcatcttcaatttaaaatcaaagtaaatctttttctttcgaaaatgtttccaaaaacgatgatatgaatgaaaaccgacatt |
475 |
Q |
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| T |
13889123 |
gcactaaaatatttacgatcatcttcaatttaaaatcaaagtaaatctttttctttcaaaaacgtttccaaaaacgatgatatgaatgaaaaccgacatt |
13889222 |
T |
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| Q |
476 |
ttataaatcaacttcaacaaataattgtcacaaatcatcaaccttatcacaaaaattattattattcattgacggtaaataggtaattccacgaggtcac |
575 |
Q |
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| T |
13889223 |
ttataaatcaacttcaacaaataattgtcacaaatcttcaaccttatcacaaaaattattattattcattgacggtgaataggtaactccacgagatcac |
13889322 |
T |
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| Q |
576 |
acaatccgaacactttaaagatgtccccgaaaacactctcctcaaagggcgccaacttcaatctaagttccctccaccatgaggttattatcatttgtta |
675 |
Q |
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| T |
13889323 |
acaatccgaacactttaaagatgtc--------------ccttaaagggcgccaacttcaatctaagttccctcctccatgaggttattatcatttgtta |
13889408 |
T |
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| Q |
676 |
agatgttatctccatgtgagattacgag |
703 |
Q |
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| T |
13889409 |
agatgttatctcaatgtgagattacgag |
13889436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 703 - 995
Target Start/End: Original strand, 13889508 - 13889802
Alignment:
| Q |
703 |
gtcactaggggtggaaacaggctaacagctttgtaaggccaaagcatgacctatcnnnnnnnttaaggcttaagtctaacttgcggtctgtcatagactt |
802 |
Q |
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|||| |||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
13889508 |
gtcattaggggtggaaacatgctaacggctttgtaaggcctaagcatgacctatcaaaaaaattaaggcttaagtctgacttgcggtctgtcatagactt |
13889607 |
T |
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| Q |
803 |
aagtcttacctcttgaaagcctgatgtggcatgttatagtctatttaaaagtctatttcgtataaacatcattaaataaatagcgtgatttgagtttgaa |
902 |
Q |
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| T |
13889608 |
gagtctaacctcttgaaagtc-gatgtggcatgctatagtctatttaaaagtctatttcatatgaacatcttcaaataaatagcgtgatttgagtttgaa |
13889706 |
T |
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| Q |
903 |
tagactaacgaattaatccatatggccttgttttggacagcgatggacatttgagccta--tacccatccaatcc-aaatggcaatgggatgcaca |
995 |
Q |
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| T |
13889707 |
tagactaacgaactaagccatatgaccttattttgggcagcgatggacatttgagcttagtgactcatccaatccaaaatggcaatgggatgcaca |
13889802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 843 - 881
Target Start/End: Original strand, 7254 - 7292
Alignment:
| Q |
843 |
ctatttaaaagtctatttcgtataaacatcattaaataa |
881 |
Q |
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| T |
7254 |
ctatttaaaagtctatttcatataaacatctttaaataa |
7292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 843 - 881
Target Start/End: Complemental strand, 6829166 - 6829128
Alignment:
| Q |
843 |
ctatttaaaagtctatttcgtataaacatcattaaataa |
881 |
Q |
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| T |
6829166 |
ctatttaaaagtctatttcatataaacatctttaaataa |
6829128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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