View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042-Insertion-20 (Length: 152)
Name: NF5042-Insertion-20
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042-Insertion-20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 26721996 - 26722140
Alignment:
| Q |
8 |
gtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaacc |
107 |
Q |
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| T |
26721996 |
gtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaacc |
26722095 |
T |
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| Q |
108 |
aaaaggcatcattccttctcaaattaattttttcttctcactcag |
152 |
Q |
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| T |
26722096 |
aaaaggcatcattccttctcaaattaattttttcttctcactcag |
26722140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 45116923 - 45116782
Alignment:
| Q |
11 |
atttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaa |
110 |
Q |
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| T |
45116923 |
atttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaa |
45116824 |
T |
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| Q |
111 |
aggcatcattccttctcaaattaattttttcttctcactcag |
152 |
Q |
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| T |
45116823 |
aggcatcattccttctcaaattaattttttcttctcactcag |
45116782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 6e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 2987455 - 2987596
Alignment:
| Q |
11 |
atttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaa |
110 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
2987455 |
atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctcataatcacgaaaccaaa |
2987554 |
T |
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| Q |
111 |
aggcatcattccttctcaaattaattttttcttctcactcag |
152 |
Q |
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| T |
2987555 |
aggcatcattccttctcaaattaattttttcttctcactcag |
2987596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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