View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5042-Insertion-5 (Length: 839)

Name: NF5042-Insertion-5
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5042-Insertion-5
NF5042-Insertion-5
[»] chr8 (7 HSPs)
chr8 (467-839)||(1889814-1890186)
chr8 (661-839)||(1666241-1666420)
chr8 (219-309)||(1671233-1671323)
chr8 (739-839)||(1892888-1892989)
chr8 (377-438)||(33842234-33842296)
chr8 (406-463)||(36104391-36104449)
chr8 (377-438)||(6402682-6402744)
[»] chr2 (3 HSPs)
chr2 (680-821)||(5999420-5999562)
chr2 (76-129)||(5995944-5995997)
chr2 (406-463)||(42444272-42444330)
[»] chr4 (4 HSPs)
chr4 (372-462)||(14526034-14526124)
chr4 (372-461)||(48583900-48583989)
chr4 (397-453)||(2358812-2358869)
chr4 (372-421)||(6019874-6019923)
[»] chr5 (2 HSPs)
chr5 (372-462)||(41312898-41312988)
chr5 (410-453)||(21031959-21032002)
[»] scaffold0471 (1 HSPs)
scaffold0471 (406-463)||(2506-2564)
[»] chr1 (1 HSPs)
chr1 (377-438)||(11021566-11021628)
[»] scaffold0039 (1 HSPs)
scaffold0039 (377-438)||(102839-102901)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 467 - 839
Target Start/End: Complemental strand, 1890186 - 1889814
Alignment:
Q  467 aataaacatctgagattttattagttactgtcatgatcaagtcgcaggcgaaaacaaaacttagaatctgactctcttctcggacaagcttaacgtctcc 566  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  1890186 aataaacatatgagattttattagttactgtcatgatgaagtcgcaggcgaaaacaaaacttagaatgtgactctcttcttggacaagcttaacgtctcc 1890087  T
Q  567 tttcaatggatcctttcagagacaattctatcttttgnnnnnnncgtctcctttcagagaagtacctaaatattctgaagaaaaagaaaatccgatagat 666  Q
    ||||||||||||||||||||||||||||||||||||        |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  1890086 tttcaatggatcctttcagagacaattctatctttt-aaaaaaacgtcacctttcagagaagtacttaaaaattctgaagaaaaagaaaatccgatagat 1889988  T
Q  667 aactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttctatccc 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1889987 aactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttataacaacaaaattgagaaccttttccttctatccc 1889888  T
Q  767 taccaactatataattatcaactctacttgaatacatccaatttgtatagcctc-tgcaagcatgttgtttagt 839  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1889887 taccaactatataattatcaactctacttgaatacatccaatttgtatagcctcttacaagcatgttgtttagt 1889814  T

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Target: chr8; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 661 - 839
Target Start/End: Original strand, 1666241 - 1666420
Alignment:
Q  661 atagataactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttc 760  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1666241 atagataactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctctaatttctaacaacaaaattgagaaccttttccttc 1666340  T
Q  761 tatccctaccaactatataattatcaactctacttgaatacatccaatttgtatagcctc-tgcaagcatgttgtttagt 839  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1666341 tatccctaccaactatataattatcaactctacttgaatacatccaatttgtatagcctcttacaagcatgttgtttagt 1666420  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 1671233 - 1671323
Alignment:
Q  219 ggaaactcaaaaacccaaacccaacgacggttaagaacgtaaagaaccccataaaaggcaccaacaagaaaacccctgaacacaattcttc 309  Q
    |||||||||| |||||||| |||||||||||||  |||||||| |||||||||| |||||||||||||||||||||| ||| ||| |||||    
T  1671233 ggaaactcaagaacccaaagccaacgacggttatcaacgtaaataaccccataataggcaccaacaagaaaacccctaaacccaactcttc 1671323  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 739 - 839
Target Start/End: Complemental strand, 1892989 - 1892888
Alignment:
Q  739 aaaattgagaaccttttccttctatccctaccaactatataattatcaactctacttgaatacatccaatttgtatagcctc-tgcaagcatgttgttta 837  Q
    |||||||||||| |||||| || |||||| ||| ||||||||||||||||| |||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1892989 aaaattgagaactttttccctccatcccttccatctatataattatcaactatacttgacaacatcaaatttgtatagcctcttacaagcatgttgttta 1892890  T
Q  838 gt 839  Q
    ||    
T  1892889 gt 1892888  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 33842296 - 33842234
Alignment:
Q  377 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 438  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  33842296 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 33842234  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 36104449 - 36104391
Alignment:
Q  406 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 463  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  36104449 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 36104391  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 6402682 - 6402744
Alignment:
Q  377 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 438  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||| ||||||||||    
T  6402682 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcatgtgttgagt 6402744  T

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Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 680 - 821
Target Start/End: Complemental strand, 5999562 - 5999420
Alignment:
Q  680 atgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttctatccctaccaact--ata 777  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||||| |||  |  |||    
T  5999562 atgcaagtatgttcaacataatcactacagattaatatccatctcaaatttcggacaacaaaattgagaaacttttccttccatcccttccatattcata 5999463  T
Q  778 taattatcaactctacttgaatacatccaatttgtatagcctct 821  Q
    |  |||| |||||| |||| | |||||| |||||||||||||||    
T  5999462 ttgttataaactctgcttgca-acatccgatttgtatagcctct 5999420  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 5995997 - 5995944
Alignment:
Q  76 caaaggaatcctaatcttataattgaagaaaggaggacgctgcacacaaacaaa 129  Q
    |||||||||||  |||||| ||||| ||||||||||||||||||||||||||||    
T  5995997 caaaggaatccccatcttaaaattgtagaaaggaggacgctgcacacaaacaaa 5995944  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Original strand, 42444272 - 42444330
Alignment:
Q  406 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 463  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  42444272 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 42444330  T

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Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 372 - 462
Target Start/End: Original strand, 14526034 - 14526124
Alignment:
Q  372 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc 462  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||    
T  14526034 aaagaaatccattaataaagtgaattgcgtgctgttgaacatgtcgtgtggttttcgtgtgttgaatttgtcgtgctgtataacagcgctc 14526124  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 372 - 461
Target Start/End: Original strand, 48583900 - 48583989
Alignment:
Q  372 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgct 461  Q
    |||| |||||||| ||||||||||||  ||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  48583900 aaagaaatccatttataaagtgaattaagtgttgttcaacatgttgtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct 48583989  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 2358869 - 2358812
Alignment:
Q  397 tgggtgctgttcaacatgtcgtgtggctttcgtgtgtt-gagtttgtcgtgttgtata 453  Q
    |||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  2358869 tgggtgatgttcaacatgtcctgcggctttcgtgtgttagagtttgtcgtgttgtata 2358812  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 6019923 - 6019874
Alignment:
Q  372 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtg 421  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  6019923 aaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtg 6019874  T

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Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 41312988 - 41312898
Alignment:
Q  372 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc 462  Q
    |||| |||| |||||||||||||||||||||  ||||||||  |  ||| || ||||||||||||||||||||||||||||||||||||||    
T  41312988 aaagaaatctattaataaagtgaattgggtgtcgttcaacaacttatgtagcattcgtgtgttgagtttgtcgtgttgtatagcagcgctc 41312898  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 453
Target Start/End: Original strand, 21031959 - 21032002
Alignment:
Q  410 acatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtata 453  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||    
T  21031959 acatgtcgtgtggctttcgtgtgttaagttgttcgtgttgtata 21032002  T

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Target: scaffold0471 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 2564 - 2506
Alignment:
Q  406 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 463  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  2564 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 2506  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 11021628 - 11021566
Alignment:
Q  377 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 438  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  11021628 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 11021566  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 102839 - 102901
Alignment:
Q  377 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 438  Q
    |||||||||||||||| |||  |||||| || ||||||||||| ||| |||||||||||||||    
T  102839 aatccattaataaagtaaatatggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 102901  T

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