View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042-Insertion-7 (Length: 679)
Name: NF5042-Insertion-7
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042-Insertion-7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 283 - 669
Target Start/End: Complemental strand, 26833367 - 26832982
Alignment:
| Q |
283 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttccgataggatcatcatacaaatt |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26833367 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
26833268 |
T |
|
| Q |
383 |
cttgatgattctactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaannnnnnnncttccatttcggttctcttg |
482 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
26833267 |
cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaattttttttcttccattttggttctcttg |
26833168 |
T |
|
| Q |
483 |
ttacttgttagacacttcagtcatttatatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatcgagtaacgtttatgccattaa |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
26833167 |
ttacttgttagacacttcagtcatttatatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatcgagtaacgtttatgccactaa |
26833068 |
T |
|
| Q |
583 |
aaaaagttgaattagaaacgtaaaaattcaaggaagnnnnnnnnnntgaaattcatcttttaatttggtcacgtatcattgacgcta |
669 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
26833067 |
aaaaagttgaattagaaacgtaaaaattcaaggaagaaaaaaaaaatgaaattcatc-tttaatttggtcaagtatcattgacgcta |
26832982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 26833642 - 26833438
Alignment:
| Q |
8 |
gcagtgtttctttgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccag |
107 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833642 |
gcagtgtttgtttgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccag |
26833543 |
T |
|
| Q |
108 |
agaaacgttataaatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833542 |
agaaacgttataaatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagaga |
26833443 |
T |
|
| Q |
208 |
ggtga |
212 |
Q |
| |
|
||||| |
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|
| T |
26833442 |
ggtga |
26833438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 26786853 - 26786649
Alignment:
| Q |
8 |
gcagtgtttctttgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccag |
107 |
Q |
| |
|
||||||||| | |||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||| |||| ||| | |
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|
| T |
26786853 |
gcagtgtttatctgcctaagcatgtcattgatgatattggttgagatagtttacatgggaattgtgatttgtttagtgaagttgtttaaaagaacacctg |
26786754 |
T |
|
| Q |
108 |
agaaacgttataaatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagaga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||| ||||||||||| |
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|
| T |
26786753 |
agaaacgttataaatgggagactattaaggatgatgttgagttggaaaactctaattaccctattgttcttgttcaaatcccaatgtacaatgaaagaga |
26786654 |
T |
|
| Q |
208 |
ggtga |
212 |
Q |
| |
|
||||| |
|
|
| T |
26786653 |
ggtga |
26786649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 26799607 - 26799425
Alignment:
| Q |
30 |
tgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggagac |
129 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| ||||||| |||||| |||| |||||||||||||||| |||| ||||||||| ||||||||| || | |
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|
| T |
26799607 |
tgtcattgataatgttggttgaaaaagtatacatggcaattgtcatttgttatgtgaagttgtttaagagaacaccagagaagtgttataaatttaaggc |
26799508 |
T |
|
| Q |
130 |
tattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26799507 |
tattgaggatgatgttgagttgggaaactctaattatcccatggttcttgttcaagttccaatgtacaatgaaagagaggtga |
26799425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 26823699 - 26823517
Alignment:
| Q |
30 |
tgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggagac |
129 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||| |||||| |||| |||||||||||||||| |||| |||||||||||||||||||| ||| | |
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|
| T |
26823699 |
tgtcattgataatgttggttgagaaagtttacatggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttataaatttgaggc |
26823600 |
T |
|
| Q |
130 |
tattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| || ||||||||||| || | |||||||| |||||||||||||||| |
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|
| T |
26823599 |
tattgaggatgatgttgagttgggaaactcctattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtga |
26823517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 292 - 430
Target Start/End: Complemental strand, 26786570 - 26786432
Alignment:
| Q |
292 |
atataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttccgataggatcatcatacaaattcttgatgat |
391 |
Q |
| |
|
||||| || |||| ||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
26786570 |
atatatatggttctaaatgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgat |
26786471 |
T |
|
| Q |
392 |
tctactgatcctacaattaaggtatctatgctacaaaac |
430 |
Q |
| |
|
|| ||||| || ||||| ||||||| ||||||||||||| |
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|
| T |
26786470 |
tcaactgacccaacaatcaaggtatatatgctacaaaac |
26786432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 299 - 426
Target Start/End: Complemental strand, 26823436 - 26823309
Alignment:
| Q |
299 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttccgataggatcatcatacaaattcttgatgattctactg |
398 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||| |||| |
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|
| T |
26823436 |
ttgttcatattgcaggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26823337 |
T |
|
| Q |
399 |
atcctacaattaaggtatctatgctaca |
426 |
Q |
| |
|
| || ||||| ||||||| |||||||| |
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|
| T |
26823336 |
acccaacaatcaaggtatacatgctaca |
26823309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 299 - 416
Target Start/End: Complemental strand, 26799345 - 26799228
Alignment:
| Q |
299 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttccgataggatcatcatacaaattcttgatgattctactg |
398 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
26799345 |
ttgttcaaattgcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26799246 |
T |
|
| Q |
399 |
atcctacaattaaggtat |
416 |
Q |
| |
|
| || || || ||||||| |
|
|
| T |
26799245 |
acccaaccatcaaggtat |
26799228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 41545758 - 41545815
Alignment:
| Q |
86 |
aagttgtttggtagaaaaccagagaaacgttataaatgggagactattaaggatgatg |
143 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
41545758 |
aagttgtttggtcataaaccagagaaacattataaatgggaggcacttaaggatgatg |
41545815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 41916711 - 41916892
Alignment:
| Q |
29 |
atgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggaga |
128 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| ||||| |||| ||| || ||||||| | ||||| |||||||| || |||||||| |||||||| |
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|
| T |
41916711 |
atgtcggtgatgatgttcattgagagggtttatatgggtgttgtcattactcttgtgaagctatttggaagaaaacctgaaaaacgttacaaatgggaac |
41916810 |
T |
|
| Q |
129 |
ctattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggt |
210 |
Q |
| |
|
| |||||||||||| ||||||| || |||||| ||| |||||||||||||||||| | || ||||| |||||||||||||| |
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|
| T |
41916811 |
cgattaaggatgatattgagttagggaactcttgttatcctatggttcttgttcaaatacctatgtacaatgaaagagaggt |
41916892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
| Q |
312 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttccgataggatcatcatacaaattcttgatgattctactgatcctacaattaa |
411 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| || ||||||||||| ||||||||||| |||||| |||||||||| || ||||| || ||||| || |
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|
| T |
41916992 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
41917091 |
T |
|
| Q |
412 |
ggta |
415 |
Q |
| |
|
|||| |
|
|
| T |
41917092 |
ggta |
41917095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 2021636 - 2021679
Alignment:
| Q |
167 |
cctatggttcttgttcaagttccaatgtataatgaaagagaggt |
210 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
2021636 |
cctatggttcttgttcagattccaatgtgtaatgaaagagaggt |
2021679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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