View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5042-Insertion-9 (Length: 671)

Name: NF5042-Insertion-9
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5042-Insertion-9
NF5042-Insertion-9
[»] chr3 (1 HSPs)
chr3 (8-671)||(32670317-32670986)


Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 671
Target Start/End: Original strand, 32670317 - 32670986
Alignment:
Q  8 attagaaggtttacaatcacctaaatatgttgatcagatgttgttaagtgcttctttctttgatattgattcatcatcacatttgcttggtgatgatcta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32670317 attagaaggtttacaatcacctaaatatgttgatcagatgttgttaagtgcttctttctttgatattgattcatcatcacatttgcttggtgatgatcta 32670416  T
Q  108 tatgaagaaagtgatattcctttgtggaacttcagctgaagaaacgatcaaatactcnnnnnnnnnnnnnnnnnnnn--acaaaattcaattcaatttta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||    
T  32670417 tatgaagaaagtgatattcctttgtggaacttcagctgaagaaacgatcaaatactcttttctttttcttttcttttttacaaaattcaattcaatttta 32670516  T
Q  206 attcttttgtcttcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatgccacatattacaatatatagtctgagttcaaattt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32670517 attcttttgtcttcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatgccacatattacaatatatagtctgagttcaaattt 32670616  T
Q  306 gtatatcnnnnnnngatacata----tggtgaatgttgggggaaattcatattaattacggacatgtgaannnnnnnnnnnnnnnngatatggattcttc 401  Q
    |||||||        |||||||    | ||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||    
T  32670617 gtatatcttttttttatacatacatatagtgaatgttgggggaaattcatattaattacggacatgtgaatttttttggcttttttgatatggattcttc 32670716  T
Q  402 tacatatttgaaattatgtatcattgatgcaaagcttgttatgtcaatgtcgtgaacaaagggacgaaatacacgtagttatcaagagtaaataaatatt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32670717 tacatatttgaaattatgtatcattgatgcaaagcttgttatgtcaatgtcgtgaacaaagggacgaaatacatgtagttatcaagagtaaataaatatt 32670816  T
Q  502 cctttaatcatttcttaatgcaactatgggagaaaatgttgtggttatatgtgagtaactatagggaggcctttattgcatggaaagttgttagagaacc 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32670817 cctttaatcatttcttaatgcaactatgggagaaaatgttgtggttatatgtgagtaactatagggaggcctttattgcatggaaagttgttagagaagc 32670916  T
Q  602 ttaaatcatattcatagagaataaggaacccctttattccgctcaacnnnnnnnctctcgacctctctta 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  32670917 ttaaatcatattcatagagaataaggaacccctttattccgctcaactttttttctctcgacctctctta 32670986  T

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