View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_10 (Length: 428)
Name: NF5042_high_10
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Original strand, 1278741 - 1279146
Alignment:
| Q |
15 |
gatataatataagaggagtgctatccatcacaagcaattgtcgcacgattgcatagcgaaaagtgtttaaccaattaannnnnnnnnctggctggaattc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
1278741 |
gatataatataagaggagtgctatccatcacaagcaattgtctcacgattgtatagcgaaaagtgtttaaccaattaaattttttt-ctggccggaattc |
1278839 |
T |
|
| Q |
115 |
acattgggtgggggaaatggttgacctattaaaacactagaaagccggaatgaacgggctcgggatgatttcgcatgaaatttttcactgaatatatcat |
214 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1278840 |
acgctgggtgggggaaatggttgaccaattaaaacactagaaagccggaatgaacgggctcgggatgatttcgcatgaaatttttcgctgaatatatcat |
1278939 |
T |
|
| Q |
215 |
tttccataatataaatagaattatattgtttctatgaaatacctagcagcagtttggttgaatatagatgtaccataatccaagtagaattgtaagattt |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1278940 |
tttccataatataaatagaatgatattgtttctatgaaatacctagcagcagtttggttgaatatagattgaccataatccaagtagaattgtaagattt |
1279039 |
T |
|
| Q |
315 |
ctttagcagtaaatgcaggacgagaagtatcattcaagttaggagcagcaagcatagcagcaatgagtcctccagtacttgttcctgctatcacatcaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
1279040 |
ctttagcagtaaatgcaggacgagaagtatcattcaagttaggagcagcaagcatagcagcaatgagtcctccagtacttgtccctgctatcacatcaaa |
1279139 |
T |
|
| Q |
415 |
ataatct |
421 |
Q |
| |
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||||||| |
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| T |
1279140 |
ataatct |
1279146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 247 - 421
Target Start/End: Original strand, 1200970 - 1201144
Alignment:
| Q |
247 |
tatgaaatacctagcagcagtttggttgaatatagatgtaccataatccaagtagaattgtaagatttctttagcagtaaatgcaggacgagaagtatca |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||| || || || || | ||||||||||| ||| |
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| T |
1200970 |
tatgaaatacctagcagcagtttggttgaatatagaaggaccaaaatccaagtagaattgtttgatttgttcaggagaaagtagaggacgagaagggtca |
1201069 |
T |
|
| Q |
347 |
ttcaagttaggagcagcaagcatagcagcaatgagtcctccagtacttgttcctgctatcacatcagaataatct |
421 |
Q |
| |
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|| || ||||| || |||||||||||||||||||||||||| || || |||| |||||||||| |||||||| |
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| T |
1201070 |
tttgggtgaggagtagtgagcatagcagcaatgagtcctccagtgctagtccctgttatcacatcaaaataatct |
1201144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 251 - 420
Target Start/End: Original strand, 1228036 - 1228205
Alignment:
| Q |
251 |
aaatacctagcagcagtttggttgaatatagatgtaccataatccaagtagaattgtaagatttctttagcagtaaatgcaggacgagaagtatcattca |
350 |
Q |
| |
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||||||||||||| |||||| |||||||| || | |||||| | | |||||||| ||| |||||| || |||||||||||||||||||| ||||| |
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| T |
1228036 |
aaatacctagcagaagtttgattgaatattgaaggaccatattttaggtagaattctaaaatttctggagtggtaaatgcaggacgagaagtgtcatttg |
1228135 |
T |
|
| Q |
351 |
agttaggagcagcaagcatagcagcaatgagtcctccagtacttgttcctgctatcacatcagaataatc |
420 |
Q |
| |
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||| |||||||||||||| | |||||||| |||||| || || || || |||||||||||| ||||||| |
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| T |
1228136 |
ggttgggagcagcaagcatggtagcaatgattcctcctgtgctggtccccgctatcacatcaaaataatc |
1228205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 420
Target Start/End: Original strand, 1243446 - 1243616
Alignment:
| Q |
250 |
gaaatacctagcagcagtttggttgaatatagatgtaccataatccaagtagaattgtaagatttctttagcagtaaatgcaggacgagaagtatcattc |
349 |
Q |
| |
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|||||||||||| | |||||| ||||||||||| | |||| | || |||||||||| ||||||||| || | || |||||| ||||||| || || |
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| T |
1243446 |
gaaatacctagcggaagtttgattgaatatagaaggaccaaagtctaagtagaattttaagatttcaggagtataaagtgcagggcgagaagggtcgttt |
1243545 |
T |
|
| Q |
350 |
aagttaggagcagcaagcatagcagcaatgagtcctccagtacttgttcctgctatcacatcagaataatc |
420 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| || || | |||| |||||||||| ||||||| |
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| T |
1243546 |
ggatgaggagcagcaagcatagcagcaatgagtcctcctgtgctagcccctgatatcacatcaaaataatc |
1243616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 420
Target Start/End: Original strand, 1254145 - 1254315
Alignment:
| Q |
250 |
gaaatacctagcagcagtttggttgaatatagatgtaccataatccaagtagaattgtaagatttctttagcagtaaatgcaggacgagaagtatcattc |
349 |
Q |
| |
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|||||||||||| | |||||| ||||||||||| | |||| | || |||||||||| ||||||||| || | || |||||| ||||||| || || |
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| T |
1254145 |
gaaatacctagcggaagtttgattgaatatagaaggaccaaagtctaagtagaattttaagatttcaggagtataaagtgcagggcgagaagggtcgttt |
1254244 |
T |
|
| Q |
350 |
aagttaggagcagcaagcatagcagcaatgagtcctccagtacttgttcctgctatcacatcagaataatc |
420 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| || || | |||| |||||||||| ||||||| |
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|
| T |
1254245 |
ggatgaggagcagcaagcatagcagcaatgagtcctcctgtgctagcccctgatatcacatcaaaataatc |
1254315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 38997765 - 38997571
Alignment:
| Q |
27 |
gaggagtgctatccatcacaagcaattgtcgcacgattgcatagcgaaaagtgtttaaccaattaannnnnnnnnctggctggaattcacattgggtggg |
126 |
Q |
| |
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|||||||||||| |||| | |||||||||| |||||||||||||||||| ||| ||||| |||| ||||| |||| ||| |||||||| |
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| T |
38997765 |
gaggagtgctatgcatcgcgagcaattgtctcacgattgcatagcgaaataagttcaaccacttaaaatttttg-ctggccagaataaacactgggtggg |
38997667 |
T |
|
| Q |
127 |
ggaaatggttgacctattaaaacactagaaagccggaatgaacgggctcgggatgatttcgcatgaaatttttcactgaatatatcattttccata |
222 |
Q |
| |
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| |||||||| || ||||||||||| |||||||||||| | ||||| |||||||||||| |||| |||||| | |||||||||||||||||| |
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| T |
38997666 |
gtaaatggttagccaattaaaacacttcaaagccggaatgcatgggcttgggatgatttcgtgtgaattttttcgcccaatatatcattttccata |
38997571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 25550435 - 25550533
Alignment:
| Q |
121 |
ggtgggggaaatggttgacctattaaaacactagaaagccggaatgaacgggctcgggatgatttcgcatgaaatttttcactgaatatatcattttcc |
219 |
Q |
| |
|
||||||| |||||||| || ||||||||||| ||||||||||||| | || ||||||||||||||| ||||||||||| ||| ||| |||||||||| |
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|
| T |
25550435 |
ggtggggtaaatggttagccaattaaaacacttgaaagccggaatgtataggatcgggatgatttcgcgtgaaatttttcgctgcatacatcattttcc |
25550533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 34697900 - 34697824
Alignment:
| Q |
142 |
attaaaacactagaaagccggaatgaacgggctcgggatgatttcgcatgaaatttttcactgaatatatcattttcc |
219 |
Q |
| |
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||||||||||| ||||| |||||| | ||||| ||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
34697900 |
attaaaacacttgaaagttggaatgcatgggctggggatgatttcgcatgaaa-ttttcgctacatatatcattttcc |
34697824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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