View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_19 (Length: 315)
Name: NF5042_high_19
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 6854382 - 6854129
Alignment:
| Q |
18 |
acaatttgcacactagagatttatcttctaatccaaagcctacgc-------tgctacatatattcttgttcctcaggcacactattcagcattagaaca |
110 |
Q |
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| T |
6854382 |
acaatttgcacactagagatttatcttttaatccaaagcctaggaactaggatgttacatatattctagttcctcaggcacactactgggcattagaata |
6854283 |
T |
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| Q |
111 |
aactaatccttaggaaacaatagaagatatttcaagattagaaactattcttcttagataagctatgataatgtcaagatattctaagatactttcttat |
210 |
Q |
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| T |
6854282 |
aactaatccttaggaaacaatcaaagatatttcaagattagaaactattcttattagataagctatgataacgtcaagatattctaatatactttcttat |
6854183 |
T |
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| Q |
211 |
ac--tgtaacaattatttctatcacctttatgcatttttatttggtattgattg |
262 |
Q |
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| T |
6854182 |
accattcaacaattatttctatcacctttatgcatttttatttggtattgattg |
6854129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 6824211 - 6824264
Alignment:
| Q |
18 |
acaatttgcacactagagatttatcttctaatccaaagcctacgctgctacata |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6824211 |
acaatttgcacactagagatttatcttctaatccaaagcctacgctgctacata |
6824264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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