View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_2 (Length: 709)
Name: NF5042_high_2
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 274 - 692
Target Start/End: Complemental strand, 43619616 - 43619216
Alignment:
| Q |
274 |
actgttaccaccacaattttaaatctcgcttactgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattg |
373 |
Q |
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| T |
43619616 |
actgttaccaccacaattttaaatctcacttaccgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattg |
43619517 |
T |
|
| Q |
374 |
atcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatcaccttgagctcaagtaacatgtgatgtgctatgtatctcgacac |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43619516 |
atcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatcaccttgagctcaagtaacatgtgatgtgctatgtatctcgacac |
43619417 |
T |
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| Q |
474 |
ttcaaattattaatagtgtcgatgtgttagtatcagtatcgtatttgatgttcgtgtcaatgcttcataggtgatataagatgctaagtagaaattaatg |
573 |
Q |
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| T |
43619416 |
ttcaaattattaatagtgtcgatgtg------------------ttgatgttcgtgtcaatgcttcataggtgatataagatgctaagtagaaattaatg |
43619335 |
T |
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| Q |
574 |
atttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaa |
673 |
Q |
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| T |
43619334 |
atttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaa |
43619235 |
T |
|
| Q |
674 |
gcaagggctaaccttgaca |
692 |
Q |
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| T |
43619234 |
gcaagggctaaccttgaca |
43619216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 43620497 - 43620223
Alignment:
| Q |
10 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
109 |
Q |
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| T |
43620497 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
43620398 |
T |
|
| Q |
110 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatc---atggtccatgttttgatgtcccagtctccca |
206 |
Q |
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| T |
43620397 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatcaatatggtccatgttttgatgtcccagtctccca |
43620298 |
T |
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| Q |
207 |
gccagagtgacatcgattatcaactacatttgactgcgattccccacaacataaaaaatgtgacgtgactgttac |
281 |
Q |
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| T |
43620297 |
gccagagtgacatcgattatcaactacatttgactgcgattctccacaacataaaaaatgtgacgtgactgttac |
43620223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 594 - 685
Target Start/End: Complemental strand, 43626692 - 43626601
Alignment:
| Q |
594 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaac |
685 |
Q |
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| T |
43626692 |
ttagctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaac |
43626601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 43627125 - 43627035
Alignment:
| Q |
10 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacg |
100 |
Q |
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| T |
43627125 |
catcatcgaaaattatgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacg |
43627035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 43626898 - 43626809
Alignment:
| Q |
309 |
catcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
398 |
Q |
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|||| ||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||| | |||||||| |||||| ||||||| |
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| T |
43626898 |
catctatgtccatgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggatcccagcct |
43626809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 32407657 - 32407745
Alignment:
| Q |
310 |
atcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
398 |
Q |
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| T |
32407657 |
atcaatgtccatgtgtgagcttattgcagctcctgcagttgcaccaaatccaggtactacattgagcactccatctggaattccagcct |
32407745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 32434171 - 32434075
Alignment:
| Q |
303 |
ttactgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagccta |
399 |
Q |
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| T |
32434171 |
ttactgcatcaatgtccatatgtgaggttattgcagctccagcagttgaaccaaatcctggcagtacattgagcactccatctggaataccagccta |
32434075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 32407441 - 32407515
Alignment:
| Q |
10 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcag |
84 |
Q |
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|||||||||| |||| ||||||||| || |||||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
32407441 |
catcatcaaaaattaagaggggtgattttcctcctaattcaagtgaaactggtttcaaattacttctagctgcag |
32407515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 643
Target Start/End: Original strand, 32408372 - 32408421
Alignment:
| Q |
594 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcagg |
643 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
32408372 |
ttagcaagatgagcataaaacaaagcagagagaggtgtttgttcagcagg |
32408421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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