View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_21 (Length: 286)
Name: NF5042_high_21
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 40266092 - 40266348
Alignment:
| Q |
11 |
cagagaaaaagtacacaccagataccaaggaacctctttgcgagtgtacaatgtcaacggagaattttgcagccaagagccattgtcattacatttcatt |
110 |
Q |
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| T |
40266092 |
cagagaaaaagtacacaccagataccaaggaacctcattgcgagtgtacaatgtcaacggagaattttgcagccaagagccattgtcattacatttcatt |
40266191 |
T |
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| Q |
111 |
attagcttattagcatcacactctcttagataatgttgcactacctaaaaagaaaattgcaaaacaggtaaattatcaattgccaaaggctaaaatgaga |
210 |
Q |
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| T |
40266192 |
attagcttattagcatcacactctcttagataatgttgcactacctaaaaagaaaattgcaaaacaggtaaattatcaattgccaaaggctaaaatgaga |
40266291 |
T |
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| Q |
211 |
aaagcgacatccttgtaaaagaagagattattaatgctgtcagaaattgaagtctac |
267 |
Q |
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| T |
40266292 |
aaagcgacatccttgtaaaagaagagattattaatgcagtcagaaattgaagtctac |
40266348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 40284951 - 40285079
Alignment:
| Q |
138 |
agataatgttgcactacctaaaaagaaaattgcaaaacaggtaaattatcaattgccaaaggctaaaatgagaaaagcgacatccttgtaaaagaagaga |
237 |
Q |
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| T |
40284951 |
agataatgtcgctcttcctaaaaataaaattgcaaaacaggtatagtat-agttgcaaagggataaaatgag-taagcgatatcattataaaagaagaga |
40285048 |
T |
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| Q |
238 |
ttattaatgct-gtcagaaattgaagtctac |
267 |
Q |
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| T |
40285049 |
taattcatgctagtcagaaattgaagtctac |
40285079 |
T |
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