View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_23 (Length: 275)
Name: NF5042_high_23
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_23 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 31321646 - 31321382
Alignment:
| Q |
1 |
ttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321646 |
ttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctc |
31321547 |
T |
|
| Q |
101 |
tatcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggata |
200 |
Q |
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| T |
31321546 |
tgtcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggata |
31321447 |
T |
|
| Q |
201 |
ttttatcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatg |
265 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321446 |
ttttagcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatg |
31321382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 31333899 - 31333635
Alignment:
| Q |
1 |
ttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
31333899 |
ttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctt |
31333800 |
T |
|
| Q |
101 |
tatcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggata |
200 |
Q |
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| || |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| || || ||||||||||||||||| |
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| T |
31333799 |
tgtcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgctgttcttggata |
31333700 |
T |
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| Q |
201 |
ttttatcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatg |
265 |
Q |
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|||| ||||||||||||| |||| |||||||||||||||||||||| || || ||||||||||| |
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| T |
31333699 |
atttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatg |
31333635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 2025 - 2289
Alignment:
| Q |
1 |
ttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctc |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
2025 |
ttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctt |
2124 |
T |
|
| Q |
101 |
tatcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggata |
200 |
Q |
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| || |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| || || ||||||||||||||||| |
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| T |
2125 |
tgtcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgctgttcttggata |
2224 |
T |
|
| Q |
201 |
ttttatcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatg |
265 |
Q |
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|||| ||||||||||||| |||| |||||||||||||||||||||| || || ||||||||||| |
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| T |
2225 |
atttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatg |
2289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 22513561 - 22513672
Alignment:
| Q |
14 |
catcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcata-ttctctctatcaattgaat |
112 |
Q |
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||||||||||| ||||| |||||||||||| |||||||||||| ||||| || | | ||||||||||||||||||||||| || || ||||||||||||| |
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| T |
22513561 |
catcacttctgcgtgtttctacttcaactgttcctgctgctatcagaatcctcattgcttgttgtaaaccagctctcatatttttccctatcaattgaat |
22513660 |
T |
|
| Q |
113 |
tcaatttgtagc |
124 |
Q |
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|||||||||||| |
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| T |
22513661 |
tcaatttgtagc |
22513672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 33521319 - 33521372
Alignment:
| Q |
3 |
aattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctat |
56 |
Q |
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||||||||| |||||||||||||| || ||||| ||||||||||| |||||||| |
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| T |
33521319 |
aattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctat |
33521372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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