View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_27 (Length: 251)
Name: NF5042_high_27
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_27 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 35977464 - 35977698
Alignment:
| Q |
14 |
atatcatattattattttctgaaaagaagacaagaatacacaaaacaccaaaatagtcttcaagataaaccagaccacatggcttactcaacactatact |
113 |
Q |
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| T |
35977464 |
atatcatattattattttctcaaaagaagacaagaatacacaaaacaccaaaatagtcttcaagatgaaccagaccacatggcttactcaacactatact |
35977563 |
T |
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| Q |
114 |
cctgcttagtaggaactgtctatttttcatgacccttcttctgtccttcactacaattgcatttctctacatgcaaccgttcatcatgtactactaacat |
213 |
Q |
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| T |
35977564 |
cctgcttggtaggaactgtctatttttcatgacc---cttctctccttcactacaattgcatttctctacatgcaaccgttcatcatgtactactaacat |
35977660 |
T |
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| Q |
214 |
tcacatggttaatattgttagtttcacatggttcctca |
251 |
Q |
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| T |
35977661 |
tcacatggttaatattgttagtttcacatggttcctca |
35977698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 35954775 - 35954954
Alignment:
| Q |
38 |
agaagacaagaatacacaaaacaccaaaatagtcttcaagataaaccagaccacatggcttactcaacactatactcctgcttagtaggaactgtctatt |
137 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| | |||||||||| |||| |
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| T |
35954775 |
agaaaacaaaaatacacaaaacaccaaaatagtcttcaagattgaccagaccacatggctt-----acactattctcctggt---taggaactgtatatt |
35954866 |
T |
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| Q |
138 |
ttt-catgacccttcttctgtccttcactacaattgcatttctctacatgcaaccgt---tcatcatgtactactaacattcacatggtta |
224 |
Q |
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| T |
35954867 |
tttccatgacc---cttctctccttcacacccaatgtatttatctgcatgcaaccgtttattatcatgtactactaatattcacatggtta |
35954954 |
T |
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