View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_29 (Length: 250)
Name: NF5042_high_29
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 41243973 - 41244122
Alignment:
| Q |
88 |
catttagttctaaattaagtagtggctgtgacttttcaaaggtgaaaatcaaaattttccttcctttataagattattacatttaagagacattagtaca |
187 |
Q |
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| T |
41243973 |
catttagttctaaattaagtagtggctgtgacttttcaaaggtgaaaatcaagtttttccttcctttataagattattacatttaagagacattagtaca |
41244072 |
T |
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| Q |
188 |
ttatgtttttcaaattttggcacctatcaaataatttcttgattactgat |
237 |
Q |
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| T |
41244073 |
ttatgtttttcaaattttggcacctatcaaataatttcttgattactgat |
41244122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 41243844 - 41243914
Alignment:
| Q |
2 |
tatatgcaaggggtcgaagttcgaaccctacttattcagtgaatttctctagccgctagactatttgacaac |
73 |
Q |
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| T |
41243844 |
tatatgcaaggggtcgaagttcgaacc-tacttattcaatgaatttctctagtcactagactatttgacaac |
41243914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 33342825 - 33342793
Alignment:
| Q |
40 |
gtgaatttctctagccgctagactatttgacaa |
72 |
Q |
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| T |
33342825 |
gtgaatttctctagccgctagactacttgacaa |
33342793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 5641696 - 5641664
Alignment:
| Q |
40 |
gtgaatttctctagccgctagactatttgacaa |
72 |
Q |
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| T |
5641696 |
gtgaatttctctagccgctagactacttgacaa |
5641664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 36590484 - 36590516
Alignment:
| Q |
40 |
gtgaatttctctagccgctagactatttgacaa |
72 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
36590484 |
gtgaatttctctagccactagactatttgacaa |
36590516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 37592228 - 37592196
Alignment:
| Q |
40 |
gtgaatttctctagccgctagactatttgacaa |
72 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
37592228 |
gtgaatttctctagccgctagactacttgacaa |
37592196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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