View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_35 (Length: 241)
Name: NF5042_high_35
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41243853 - 41243755
Alignment:
| Q |
1 |
cttgcatatattttgcattatatttatcccttgtcaagtgagttaaacttatgagaacaccactataatgattttatccatgtgtataatgattatttc |
99 |
Q |
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| T |
41243853 |
cttgcatataatatgcattatatttatcccttatcaagtgagttaaatttatgagaacaccactataatgattttatccatgtgtataatgattatttc |
41243755 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 41243692 - 41243631
Alignment:
| Q |
164 |
aatttgtcctgaaaaataaaatcacaaggaatgtatttggaaatccaaagagtatttgttat |
225 |
Q |
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| T |
41243692 |
aatttgtcctgaaagataaaatcacaaggaatgtatttggaaatccaaagagtatttgttat |
41243631 |
T |
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