View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042_high_4 (Length: 627)
Name: NF5042_high_4
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 72 - 608
Target Start/End: Complemental strand, 9071238 - 9070705
Alignment:
| Q |
72 |
catattactttgatcatgcaacttcttatgatcttgcttatcagaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctgaccaacctc |
171 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9071238 |
catactactttgatcatgcaacttcttatgatcttgcttatcaaaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctaaccaacctc |
9071139 |
T |
|
| Q |
172 |
ttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaac |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9071138 |
ttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaa---tgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaac |
9071042 |
T |
|
| Q |
272 |
catgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgc |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9071041 |
catgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgc |
9070942 |
T |
|
| Q |
372 |
cttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactgctcttcag |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
9070941 |
cttccaaaaaagtttttgatactcaacaattcatcatttcgaccttaccggtttgattctgaactggatatcaaaatcttcttcttcaactgcttttcag |
9070842 |
T |
|
| Q |
472 |
ttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaagatatcgt |
571 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9070841 |
ttaggaaacaacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaagatatcgt |
9070742 |
T |
|
| Q |
572 |
tgatttggaccttgtatcttgtaccaagatgtccgac |
608 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
9070741 |
tgatttggaccttctatcttgtactaagatgttcgac |
9070705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 183 - 544
Target Start/End: Complemental strand, 8862986 - 8862628
Alignment:
| Q |
183 |
cccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttc |
282 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||| ||| | ||||| ||||| |||||||||||||||||||| ||| |||||||||| || | |
|
|
| T |
8862986 |
cccttccaactagttgaggaatcatcacaagatcaa---tgtactcatcct---gagttttgcctatattgtactgaaaacaaggaaaccatgatggtcc |
8862893 |
T |
|
| Q |
283 |
tctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaa |
382 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | | | || |||||||||||| || || ||| | ||||| ||||||||| |||| ||||| |
|
|
| T |
8862892 |
tctctaccacttcaggtccaatcaaattccgtgtatattacatagactacgaatcaaaccgaatttcagtgatggacccggacaattgcattcctaaaaa |
8862793 |
T |
|
| Q |
383 |
gtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatat--caaaatgttctt-cttcaactgctcttcagttaggaaa |
479 |
Q |
| |
|
|||| ||| ||| ||||| |||||||||| ||||||||| ||| | | |||| | | |||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
8862792 |
gtttctgaaacttaacaactcatcatttctaccttaccgattttttccacaaccaggaacgacaaaattgtctttcttcaattgctcttcagttaggaaa |
8862693 |
T |
|
| Q |
480 |
cgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
544 |
Q |
| |
|
| ||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
8862692 |
caacacttgagaaaccatgatcaaacatcccaagagtcgcaagatatgatcacctgtccagttta |
8862628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 136 - 544
Target Start/End: Complemental strand, 8866899 - 8866497
Alignment:
| Q |
136 |
agtgcagagaatcatattgtggacctgaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaa |
235 |
Q |
| |
|
|||||||||||| | ||||||||| || |||| ||||| ||| ||||||||| | |||||||||||||||||| || || |||||||||||| |
|
|
| T |
8866899 |
agtgcagagaattgtcatgtggaccttacgaaccgattattcgattccccttccaacttgttaaggaatcatcacaacatgaa---tgtgtttatcct-- |
8866805 |
T |
|
| Q |
236 |
agagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaa |
335 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| |||||||| || | |||||| ||||||||||| ||| |||| ||| | | || ||||||||| |
|
|
| T |
8866804 |
-gagttttgcctatattgtactcaaaacaagaacaccatgatggtgttatctaccacttcaggtccattcatattctttgtagattacatagactacgaa |
8866706 |
T |
|
| Q |
336 |
tcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaac |
435 |
Q |
| |
|
||| || | ||||| || ||||||||||||||| || | |||| || ||| ||| ||||| | ||||||| ||||||||| ||| |||| ||| |
|
|
| T |
8866705 |
tcaaaccaactttcaatttcggacccagacaattgcatttcggaaaaaattctgaaacttaacaagacctcatttccaccttaccgattttattcagaat |
8866606 |
T |
|
| Q |
436 |
cggatatcaaaatgttc-ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcactt |
534 |
Q |
| |
|
| ||| |||||| || |||||||| || |||||| ||| |||||||||| |||||||| || |||| |||| ||| |||||||||||||||||| | |
|
|
| T |
8866605 |
c-aataacaaaatcatctttcttcaattgttcttcatttaagaaacgacacctgagaaacgaagatcaatcatctcaacggtcacaagatatgatcacct |
8866507 |
T |
|
| Q |
535 |
gtccaattta |
544 |
Q |
| |
|
|||||||||| |
|
|
| T |
8866506 |
gtccaattta |
8866497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 456 - 602
Target Start/End: Complemental strand, 9087154 - 9087008
Alignment:
| Q |
456 |
ttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgatt |
555 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||| | | || ||| |
|
|
| T |
9087154 |
ttcaactgctcttcggttaagaaacgacatttgagaaaccaatatcagataaacaaagattcacaagatatgatcacttgtccaatttacgcttcttatt |
9087055 |
T |
|
| Q |
556 |
cggacgaagatatcgttgatttggaccttgtatcttgtaccaagatg |
602 |
Q |
| |
|
| || ||| | |||| | |||||||||| ||| |||||||||||| |
|
|
| T |
9087054 |
ctgatgaaagtgtcgtcaagttggaccttgcatcatgtaccaagatg |
9087008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 186 - 311
Target Start/End: Complemental strand, 9087427 - 9087308
Alignment:
| Q |
186 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctct |
285 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||| ||||||||| || |||| |
|
|
| T |
9087427 |
ttccaactcgttaaggaatcatcacaagatcaa---tgtgtttatcct---gagttttgcttatattgtactaaaaataagagaaccatgattgtgctct |
9087334 |
T |
|
| Q |
286 |
ctacctcttcaggtccaatcaaattc |
311 |
Q |
| |
|
|| || ||||||||||||||||||| |
|
|
| T |
9087333 |
cttccaattcaggtccaatcaaattc |
9087308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 451 - 556
Target Start/End: Complemental strand, 9126305 - 9126200
Alignment:
| Q |
451 |
tcttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgc |
550 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| | |||| || ||||| |||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
9126305 |
tcttcttcaactgctcttcggttaggaaacgacacctgagaaactacgatcaattattccaagggtcacaagatatgatcacatgtccaatttacgctgc |
9126206 |
T |
|
| Q |
551 |
tgattc |
556 |
Q |
| |
|
|||||| |
|
|
| T |
9126205 |
tgattc |
9126200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 544
Target Start/End: Complemental strand, 8980134 - 8980043
Alignment:
| Q |
453 |
ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
544 |
Q |
| |
|
||||| ||||||||||| ||| |||||| |||| ||||||||||| ||||| ||| |||| ||| |||| ||||||| || ||||||||||| |
|
|
| T |
8980134 |
ttctttaactgctcttctgttgggaaacaacacctgagaaaccaagatcagtcattccaaaagttacaaaatatgattacctgtccaattta |
8980043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 488
Target Start/End: Complemental strand, 9109116 - 9108990
Alignment:
| Q |
361 |
cagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaa |
460 |
Q |
| |
|
||||||||||||||| ||||| |||||| || ||||||| |||||||||| ||||||| | ||| |||| ||| | |||| | ||| | ||||| ||| |
|
|
| T |
9109116 |
cagacaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttgaccttacagattttattcagaatcaaatataataatttccttctccaa |
9109018 |
T |
|
| Q |
461 |
ctgctcttcagttaggaaacgacacttg |
488 |
Q |
| |
|
|||||||||||||| |||||| |||||| |
|
|
| T |
9109017 |
ctgctcttcagttaagaaacggcacttg |
9108990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 9126561 - 9126479
Alignment:
| Q |
186 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgat |
277 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||| |
|
|
| T |
9126561 |
ttccaactcgttaaggaatcatcacaagat---caatgtgtttatcct---gagttttgcctgtattgtac---aaatcagaaaaccatgat |
9126479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 9108945 - 9108905
Alignment:
| Q |
559 |
acgaagatatcgttgatttggaccttgtatcttgtaccaag |
599 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
9108945 |
acgaagatatcgttgatttgaaccttgtattgtgtaccaag |
9108905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University