View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042_high_6 (Length: 481)
Name: NF5042_high_6
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 5774749 - 5774304
Alignment:
| Q |
19 |
gtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
5774749 |
gtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttcaggtaattcatca----atcg |
5774654 |
T |
|
| Q |
119 |
atcgatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagata |
218 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774653 |
atcaatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagata |
5774554 |
T |
|
| Q |
219 |
tcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat-nnnnn |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774553 |
tcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaag |
5774454 |
T |
|
| Q |
318 |
nnnttgtggaaattttgtgttatttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774453 |
gaattgtggaaattttgtgttatttagaatgtaactaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcac |
5774358 |
T |
|
| Q |
418 |
acgcacatgtgcttcatctctgatttttcacctttcttctttccatgatgatgt |
471 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5774357 |
acacacatgtgcttcatctctgatttttaacctttcttctttccatgatgatgt |
5774304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 5768469 - 5768137
Alignment:
| Q |
19 |
gtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
5768469 |
gtttgccagaccagccttactaacatggcac---------tctctgaaatcgactccaaatttcatttggaagtttttcaggtaattcatca----atcc |
5768383 |
T |
|
| Q |
119 |
atcgatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagata |
218 |
Q |
| |
|
||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
5768382 |
atcaatcaatcaaattttgtggtggttgttaatggttgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagata |
5768283 |
T |
|
| Q |
219 |
tcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnn |
318 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5768282 |
tcacgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttataaataa |
5768183 |
T |
|
| Q |
319 |
nnttgtggaaattttgtgttatttagaatgtaactaatcgaatgagta |
366 |
Q |
| |
|
||| |||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
5768182 |
aattgatgaaa--ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
188 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
287 |
Q |
| |
|
||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | || | ||||| |||||||||||| | |||||||||||||| |
|
|
| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
|
| Q |
288 |
tgttaaagaaactcaggtcagt |
309 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University