View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_high_8 (Length: 456)
Name: NF5042_high_8
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 40 - 374
Target Start/End: Original strand, 5442563 - 5442902
Alignment:
| Q |
40 |
agggagagtgatgcaagtgcttatctgccttatagattagaaatggattgagatgagagggaaacaaatgcgtgactcacattaggagataaggggcccc |
139 |
Q |
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| T |
5442563 |
agggagagtgatgcaagtgcttatctgccttatagattagaaatggattgagatgagagggaaacaaatgcgtgactcacattaggagataaggggcccc |
5442662 |
T |
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| Q |
140 |
ttagttatcattctcattataacccaaccaaaaattaagattctaatcatggttttattgcttttgc-----nnnnnnnnnnnnnntttatcatatttta |
234 |
Q |
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| T |
5442663 |
ttagttatcattctcattataacccaaccaaaaattaagattctaatcatggttttattgcttttgcaaaaaacaaaaaaaaaaaaattatcatatttta |
5442762 |
T |
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| Q |
235 |
tccatataaaagtgttttcatctatcttattttacaaattgggacaaatgtataccgttaaacatctatcacaataccaataagcctagagtctttaaac |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
5442763 |
tccatataaaagtgttttcatctatcttattttacaaattgggacaaatgtataccgttaaacatctatcacaataccaataatcctagagtcttcaaac |
5442862 |
T |
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| Q |
335 |
ttgtggtacaaaattttaaaacaagttaaattggttgaaa |
374 |
Q |
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| T |
5442863 |
ttgtggtacaaaatttgaaaacaagttaaattggttgaaa |
5442902 |
T |
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